PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.J0I4L
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 879aa    MW: 96475.2 Da    PI: 7.1771
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.J0I4LgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-18338437198
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k+l+ sd+++ grlvlpkk+ae++   ++++e+  l++ d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  e++lv+
  Aradu.J0I4L 338 FQKTLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKILDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-PEGKLVM 433
                  99**************************555566778***************9989999999***9.********************766.7777777 PP

                  EEE- CS
           B3  95 kvfr 98 
                  ++++
  Aradu.J0I4L 434 GFRK 437
                  7776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-31335447IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-20335437IPR015300DNA-binding pseudobarrel domain
CDDcd100172.66E-22336437No hitNo description
PfamPF023628.4E-16338437IPR003340B3 DNA binding domain
PROSITE profilePS5086311.18338439IPR003340B3 DNA binding domain
SMARTSM010197.8E-22338439IPR003340B3 DNA binding domain
PROSITE profilePS5105014.202566616IPR011124Zinc finger, CW-type
PfamPF074964.2E-12571613IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MASAAASVSS SSLPSSGFCY NPECKELKSQ IPKKGWRLRS GDRAELCDRC GSAFEEGRFC  60
ETFHLNTSGW RNCETCRKRI HCGCIVSDNS FMLLDPGGVE CNGCAKEHHM SSTRPWSQSF  120
SATLSERLRD ISTNNWNQLA GSGPVPWKQA PSLYNSVSSS NLQPGVASLV ELTHKLGKIY  180
GNERLPAFSL GKKNENFPGI SNWNTKLASQ EIMLVNGAMN EDQPSSCLNI CQQSSSVKED  240
SSPQPFALPV PYASPNERNG QTGGNQLQQT PPAPLGKQYS GTVHLSLDTS GETQVRNGRP  300
RVDARGRSQL LPRYWPRCTD QELQQISIDS NSVITPLFQK TLSASDAGRI GRLVLPKKCA  360
EAYFPPISQP EGLPLKILDA KGKEWIFQFR FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV  420
TFSRLEPEGK LVMGFRKAST ATQSDQDNEA NKTGNVHSTI GEVEMADPSS WSKVDKSGYI  480
AKEALGSKSS ISRKRKSSIL GSKSKRLKIE NEDLIELKIT WQEAQGLLRP PPDHVPSIVV  540
IEGFEFEEYE DAPVLGKPTI FTTSNEGEKI QWAQCENCQK WRKLPASAIL PSKWTCSDNS  600
WDPERSSCSV AQELTAEELE NLLPSCNSVI SKKMKATKQE TDNVDAMEGL DTLANLAILG  660
EDESLPTSTQ VTTKHPRHRP GCSCIVCIQP PSGKGPKHKQ TCTCTVCSTV KRRFLTLQQK  720
REKKQTEKAE TIRKKQQPPP PGQSSEIVIE DDSLPCSNAG DSSPNPNKDG NGGSDDDPNR  780
IKSSTLPFKG QIDLNIQPER EEELSPQSDS GGMKALLDGT ERHLRQLSIL NSGDADSSGS  840
QSKGVGDETR EQKLSNGVVL GNNSHNSDRE LVQPLTMNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-633164411126B3 domain-containing transcription repressor VAL1
5yzz_C2e-633164411126B3 domain-containing transcription repressor VAL1
5z00_C2e-633164411126B3 domain-containing transcription repressor VAL1
5z00_G2e-633164411126B3 domain-containing transcription repressor VAL1
5z00_K2e-633164411126B3 domain-containing transcription repressor VAL1
5z00_M2e-633164411126B3 domain-containing transcription repressor VAL1
6j9a_A2e-633164412127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1491496SRKRKS
2493507KRKSSILGSKSKRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.J0I4L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015956278.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A445DRG50.0A0A445DRG5_ARAHY; Uncharacterized protein
STRINGXP_004485711.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-151HSI2-like 1