PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.IWK7R
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 884aa    MW: 98961.3 Da    PI: 6.6875
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.IWK7RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.53e-24127228199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD v+F   ++++ +
  Aradu.IWK7R 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFI--WNEKNQ 220
                  99*****************************86555544..8************************************************..889999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  Aradu.IWK7R 221 LLLGIRRA 228
                  9****997 PP
2Auxin_resp119.13.4e-39253336183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s F+++YnPra++s+Fv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  Aradu.IWK7R 253 AAHAAATNSRFTIFYNPRACPSDFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 336
                  79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.55E-49112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-42120242IPR015300DNA-binding pseudobarrel domain
CDDcd100172.79E-22126227No hitNo description
SMARTSM010191.0E-24127229IPR003340B3 DNA binding domain
PROSITE profilePS5086313.056127229IPR003340B3 DNA binding domain
PfamPF023621.2E-22127228IPR003340B3 DNA binding domain
PfamPF065078.7E-34253336IPR010525Auxin response factor
SuperFamilySSF542779.22E-6772851No hitNo description
PfamPF023091.9E-6773865IPR033389AUX/IAA domain
PROSITE profilePS5174523.109776860IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MKLSSADFCP PPQEGEKRVL DSELWHACAG PLVSLPIVGS RVVYFPQGHS EQVAVSTNRE  60
VDAQIPNYPS LPPQLICQLH NVTMHADIET DEVYAQMTLQ PLNPQEQKEA YLPAELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFTQ QPPAQELIAR DLHGNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDA VLFIWNEKNQ LLLGIRRANR PQPVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ACPSDFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWQNS HWRSVKVGWD ESTAGEKQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPSG LPSFYGMKED DFGINSSLMW LRDADRGLQS LNFQGTGVSP  420
WMQPRLDPSM LNLQTDLYQA MAAAALQDMR TLDPTKQHPT SLIQFQQPQN FPNRTGALMQ  480
TPMLQPSQHQ QAFPNNQEIQ HPSQSQVQIQ NHLQQHLQNQ HLFNNQSHHQ QQLHQQQQQQ  540
QPQLQQQQQQ QQMVDHQQIP NVVSTMSQFV STPQSQSLPM QAISSLCHQQ SFTDSNGTAA  600
VSPLHSILGS FPQDETSHLV NLARTSSWVP VQSSSAWPSK RVAVDPLVSS EASQCVLPQV  660
DQLGQAHSTM SQNAISLPPV PGREYSVEGS TDPQNHILFG VNIENSPSLL MHHGMSSLKG  720
VGSNTHSSTV PIQSSNYLNT VGTDSSLNQG MTHSNGESGF LQTPEDGGRG NPPNKKTFVK  780
VYKSGTFGRS LDITRFTNYH ELRSELARMF GLEGELEDPL RSGWQLVVVD RENDVLLLGD  840
DPWPEFVNSV WCIKILSPRE VQQMANNGIC DDLPGHDDPR NLDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1611335743388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.IWK7R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020995157.10.0auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A445DLJ70.0A0A445DLJ7_ARAHY; Auxin response factor
STRINGGLYMA15G09750.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]