PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.IHA2E
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 336aa    MW: 39290.1 Da    PI: 10.5928
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.IHA2EgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.11.1e-1112881798
                 E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                  lp +f+e++g+    s  l l+ ++  +W+v    ++++g+++++kGWkeFv    L+ g  + Fk++ r + + +v++f+
  Aradu.IHA2E 12 KLPITFTEKYGSG--LSNSLYLNPPDDIEWRVDW--TNHDGEILFKKGWKEFVAYYSLDHGYLLWFKYNIR-TSHIKVHIFD 88
                 599*******855..7789***************..*******************************9754.4446999887 PP
2B335.71.5e-11252329787
                  .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                  +  + +++  ++p kf++++ ++++++  +++     + +  kli r +s+  ++++GW+ F++a +L++gD+++Fkl++r
  Aradu.IHA2E 252 TQRSQSRAPCYFPTKFFRKYFENNPQNANIRFG---KKLFPAKLICRPSSCDAFISAGWNLFARASKLQAGDVCLFKLINR 329
                  444555556799********7777788788855...499**************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.518190IPR003340B3 DNA binding domain
SMARTSM010190.037790IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-141191IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-81288IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-141297IPR015300DNA-binding pseudobarrel domain
CDDcd100171.87E-81388No hitNo description
SuperFamilySSF1019362.94E-11241329IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-13241330IPR015300DNA-binding pseudobarrel domain
CDDcd100173.07E-9245330No hitNo description
SMARTSM010190.092247335IPR003340B3 DNA binding domain
PfamPF023625.6E-10251329IPR003340B3 DNA binding domain
PROSITE profilePS508638.642302336IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MVANTRFITL QKLPITFTEK YGSGLSNSLY LNPPDDIEWR VDWTNHDGEI LFKKGWKEFV  60
AYYSLDHGYL LWFKYNIRTS HIKVHIFDMS CLQIEYPAND QIKEQLPRRG QQQPVKRPEE  120
PKTRDVDSSS NTQNMRLNQG RQKKRLYEQL PRDVQGQLRK KLRALVSSAS KGRQLKNDTQ  180
IRDLERSLSL HNIKSKEKNH EMPVSVNQDS NGKRNRGKDS LSSVRPCPTR PESLKEAKKF  240
KWEKPSFIIK ITQRSQSRAP CYFPTKFFRK YFENNPQNAN IRFGKKLFPA KLICRPSSCD  300
AFISAGWNLF ARASKLQAGD VCLFKLINRK YPVLDV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.IHA2E
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020995085.10.0B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A444ZSW00.0A0A444ZSW0_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15597210
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-18B3 family protein