PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.I940M
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TALE
Protein Properties Length: 332aa    MW: 37945.8 Da    PI: 6.923
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.I940MgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.3e-092572941855
                  HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    +k +yps++++  LA+++gL+++q+ +WF N+R ++
  Aradu.I940M 257 RHHKWPYPSESQKVALAESTGLDQKQINNWFINQRKRH 294
                  445679*****************************885 PP
2ELK41.33.3e-14214235122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK qLlrKYsgyLgsLkqEF+
  Aradu.I940M 214 ELKGQLLRKYSGYLGSLKQEFM 235
                  9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-2078122IPR005540KNOX1
PfamPF037907.6E-2379118IPR005540KNOX1
SMARTSM012564.5E-24125176IPR005541KNOX2
PfamPF037914.6E-20128174IPR005541KNOX2
PfamPF037895.4E-11214235IPR005539ELK domain
SMARTSM011882.8E-8214235IPR005539ELK domain
PROSITE profilePS5121311.174214234IPR005539ELK domain
PROSITE profilePS5007113.086234297IPR001356Homeobox domain
SuperFamilySSF466893.25E-19236311IPR009057Homeodomain-like
SMARTSM003897.2E-14236301IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.9E-28239299IPR009057Homeodomain-like
CDDcd000864.48E-12246298No hitNo description
PfamPF059201.1E-16254293IPR008422Homeobox KN domain
PROSITE patternPS000270272295IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MMPLLTTTHN QVINPLPNLN YSNPNNADTN SSFPLPMLTT HQEPIRNNML HTNNTGICYF  60
MDIHNNHHGS SSSSSSSSAL KAKIMSHPHY HRLLAAYVNC QKVGAPPEVV ARLEEACESA  120
AAMAATSCIG EDPALDQFME AYCEMLIKYE QELSKPFKES MLFLQRMESQ FKSLSISPSN  180
NFAGNEGVDR NGSSEDDVDL QNNAIIDPQA EERELKGQLL RKYSGYLGSL KQEFMKKRKK  240
GKLPKEARQQ LLEWWSRHHK WPYPSESQKV ALAESTGLDQ KQINNWFINQ RKRHWKPSED  300
MQFVVMDQSH PHYYIDNVVA NPFPMDFSHT ML
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229238LKQEFMKKRK
2235239KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.I940M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015940893.10.0homeobox protein SBH1 isoform X1
RefseqXP_025612875.10.0homeobox protein SBH1 isoform X1
SwissprotP466081e-152HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A445EL290.0A0A445EL29_ARAHY; Uncharacterized protein
STRINGVIT_10s0116g00190.t011e-154(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20393480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-130KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]