PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.I81SW

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Protein Properties

Length: 391aa MW: 44269.7 Da PI: 8.7541

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.I81SW	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.2	5.9e-13	297	389	3	97
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 k l +s+ ++ l+lp +fa++ + + +++ +g +++ l++++++++ ++lt+GWk+ ++ ng ++g ++ F+++ +e++++v+v+ Aradu.I81SW 297 KLL-TSNQVDNSSLILPLRFAQNAFPSRYN--NVKVILYNGCCYRLGLRWNNSRKGqVYLTRGWKSLARNNGFRSGTVLKFHVSPADETTMHVQVL 389 455.555555566******555433233..56666666*****97776667***********************88779999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.94E-7	53	133	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.06E-12	292	389	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.335	294	391	IPR003340	B3 DNA binding domain
CDD	cd10017	7.61E-10	295	390	No hit	No description
SMART	SM01019	1.1E-4	295	390	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.2E-11	295	390	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	2.1E-9	297	389	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MAIEKRLILS DFDDDRIFYL HVDPLAASHR QPSSLLTPLS TNPWRSTKFC FFTPQIIHEL 60 PSLFYRKYRP LLGERMIVMD LNNTHIELSL CKGNSSGYIV HGFENLVNCF GLSSGGWIKI 120 MYVGEDVFVV MKVKDSFMAT KELSYPSPKL ASNYYHVTHE STSRAYHIAT TPQTASFDYP 180 SEIETSSNET YCLDHYQKHG YLNQPPLPDE TLPTGELRNG SVILPTRIFN NLSQAQTSPL 240 PAGYVSLEEK VILNNPTSLL VKRQISSPQN ADETNIPPPV MPAPIIPTMS SMYTCMKLLT 300 SNQVDNSSLI LPLRFAQNAF PSRYNNVKVI LYNGCCYRLG LRWNNSRKGQ VYLTRGWKSL 360 ARNNGFRSGT VLKFHVSPAD ETTMHVQVLK L

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MAIEKRLILS DFDDDRIFYL HVDPLAASHR QPSSLLTPLS TNPWRSTKFC FFTPQIIHEL  60
PSLFYRKYRP LLGERMIVMD LNNTHIELSL CKGNSSGYIV HGFENLVNCF GLSSGGWIKI  120
MYVGEDVFVV MKVKDSFMAT KELSYPSPKL ASNYYHVTHE STSRAYHIAT TPQTASFDYP  180
SEIETSSNET YCLDHYQKHG YLNQPPLPDE TLPTGELRNG SVILPTRIFN NLSQAQTSPL  240
PAGYVSLEEK VILNNPTSLL VKRQISSPQN ADETNIPPPV MPAPIIPTMS SMYTCMKLLT  300
SNQVDNSSLI LPLRFAQNAF PSRYNNVKVI LYNGCCYRLG LRWNNSRKGQ VYLTRGWKSL  360
ARNNGFRSGT VLKFHVSPAD ETTMHVQVLK L

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.I81SW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015940715.1	0.0	uncharacterized protein LOC107466241