PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.I6GFF

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bZIP

Protein Properties

Length: 492aa MW: 54284.1 Da PI: 7.5889

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.I6GFF	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.4	2e-10	187	228	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Aradu.I6GFF 187 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDL 228 6889*************************9877777766666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.9E-8	184	249	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.232	186	230	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.8E-8	187	229	IPR004827	Basic-leucine zipper domain
CDD	cd14708	5.83E-22	188	238	No hit	No description
SuperFamily	SSF57959	8.75E-7	188	231	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.0E-8	189	232	No hit	No description
PROSITE pattern	PS00036	0	191	206	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.6E-28	269	343	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MGSQRIIGGG LGLSEAGPST HHHHHVPSYG VLHGINTANP STLINEGHAF NFGELEEAIV 60 LQGVKARNDE GKAPLFTTAP RPAATLEMFP SWPIRFHQTS RGGSKSGGES TDSALSTKTE 120 PPFEAESPMS KKATTPSLDH QHQLQHDHHD ASRIVGPSSS PQNQSQAKSP HEKRKGAGST 180 SEKPLDAKTL RRLAQNREAA RKSRLRKKAY VQQLESSRLK LTQLEQDLQR ARSQGLFMDC 240 GGVGGNLSSG GAMFDLEYGR WLEEEQRLMG ELRNGVQAAV SEGEMRGIVD GYLSHYDELF 300 RLKSVAAKSD VFHLINGMWT SQAERCFLWI GGFKPSDLIT MLIQQLEPLA EQQIMGMYGL 360 RHSSQQAEDA LSQGLDQLQQ SLVDTIAGGP IVDGVQQMVV AMGKLANLEG FVRQADNLRQ 420 QTLHQLCRLL TVRQAARCFI VIGEYYGRLR ALSSLWASRP RETLMSDDNS CQTTTDLQMV 480 HPSHHQNHFP SF

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MGSQRIIGGG LGLSEAGPST HHHHHVPSYG VLHGINTANP STLINEGHAF NFGELEEAIV  60
LQGVKARNDE GKAPLFTTAP RPAATLEMFP SWPIRFHQTS RGGSKSGGES TDSALSTKTE  120
PPFEAESPMS KKATTPSLDH QHQLQHDHHD ASRIVGPSSS PQNQSQAKSP HEKRKGAGST  180
SEKPLDAKTL RRLAQNREAA RKSRLRKKAY VQQLESSRLK LTQLEQDLQR ARSQGLFMDC  240
GGVGGNLSSG GAMFDLEYGR WLEEEQRLMG ELRNGVQAAV SEGEMRGIVD GYLSHYDELF  300
RLKSVAAKSD VFHLINGMWT SQAERCFLWI GGFKPSDLIT MLIQQLEPLA EQQIMGMYGL  360
RHSSQQAEDA LSQGLDQLQQ SLVDTIAGGP IVDGVQQMVV AMGKLANLEG FVRQADNLRQ  420
QTLHQLCRLL TVRQAARCFI VIGEYYGRLR ALSSLWASRP RETLMSDDNS CQTTTDLQMV  480
HPSHHQNHFP SF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.I6GFF

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020984905.1	0.0	transcription factor TGA9 isoform X1
Refseq	XP_025614216.1	0.0	transcription factor TGA9 isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A445BWG6	0.0	A0A445BWG6_ARAHY; Uncharacterized protein
STRING	XP_007150072.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]