PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.I1HBD
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family S1Fa-like
Protein Properties Length: 86aa    MW: 9494.13 Da    PI: 10.5327
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.I1HBDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA131.42.5e-412286670
         S1FA  6 veakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                   ++G+nPGlivl+vv gl+l fl+gn++ly+yaqknlPPrkkkPvskkk+kre+lkqGv++PGe
  Aradu.I1HBD 22 SASQGFNPGLIVLIVVFGLVLAFLIGNFVLYTYAQKNLPPRKKKPVSKKKMKRERLKQGVSAPGE 86
                 5679************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046892.2E-392286IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MADEDFDFTD KVPPSLDRAG NSASQGFNPG LIVLIVVFGL VLAFLIGNFV LYTYAQKNLP  60
PRKKKPVSKK KMKRERLKQG VSAPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.I1HBD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015970026.13e-56DNA-binding protein S1FA
RefseqXP_016207936.13e-56DNA-binding protein S1FA
RefseqXP_025605082.13e-56DNA-binding protein S1FA
RefseqXP_025663728.13e-56DNA-binding protein S1FA
SwissprotQ423374e-12S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLA0A444YNC26e-55A0A444YNC2_ARAHY; Uncharacterized protein
STRINGLus100150736e-25(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54093355