PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.HU5GE
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CO-like
Protein Properties Length: 370aa    MW: 41278.9 Da    PI: 6.4494
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.HU5GEgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.97.4e-072366340
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 +  C+ +++ +  l+C+ ++  lC +C  e H+       Ht++
  Aradu.HU5GE 23 PSPCDYCNSSRSVLYCRADSAKLCFKCDREVHSTnqlfskHTRT 66
                 568*****************************668888888876 PP
2zf-B_box20.88.1e-0768107539
     zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 
                   C+ + + ++++ C + ++ lC++C  e+H +      H++
  Aradu.HU5GE  68 LCDSCYDSPASILCSTESSVLCHNCDWESH-NlslptvHER 107
                  7*****************************.5577777765 PP
3CCT59.61e-20326368143
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                  R+ allRYk+K+ktR++eK+irYesRK++A+sR RvKGrF+k 
  Aradu.HU5GE 326 RDSALLRYKQKKKTRRYEKHIRYESRKVRAQSRIRVKGRFAKM 368
                  899**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.6E-102168IPR000315B-box-type zinc finger
PROSITE profilePS5011910.0682168IPR000315B-box-type zinc finger
CDDcd000213.45E-62568No hitNo description
PROSITE profilePS501199.92664110IPR000315B-box-type zinc finger
CDDcd000210.006556897No hitNo description
SMARTSM003360.5169110IPR000315B-box-type zinc finger
PROSITE profilePS5101714.307326368IPR010402CCT domain
PfamPF062038.1E-15326368IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MTGSHQNSTH SASHTQQDKA STPSPCDYCN SSRSVLYCRA DSAKLCFKCD REVHSTNQLF  60
SKHTRTLLCD SCYDSPASIL CSTESSVLCH NCDWESHNLS LPTVHERGPL EGFTACPSVS  120
ELLTILGFED VGKKALLYGD GGGGGDGGGG EKNSADDFMG CEIEGFSDFF VWDAPSVVSL  180
DDLISSSAPS HNFQAMEVPP LPKNRKSSCG RHREEILSQL RELAKSEPLD LDSEQQQYLQ  240
SGNMSTDLEH DFKTDKFPSY EWHRRSSEPM NQVVPLNTLL NEEVAVEHPT SAVSENNEGK  300
TPISFKSETV SVVPKATPCE LTSQERDSAL LRYKQKKKTR RYEKHIRYES RKVRAQSRIR  360
VKGRFAKMEH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1334340QKKKTRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.HU5GE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8642632e-50GQ864263.1 Glycine max CONSTANS-like zinc finger protein (COL9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015969051.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A445CMC50.0A0A445CMC5_ARAHY; Uncharacterized protein
STRINGGLYMA19G39460.11e-168(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.12e-81B-box type zinc finger protein with CCT domain