PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.HK2E0
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 338aa    MW: 38190.7 Da    PI: 7.5842
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.HK2E0genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12162209355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + h ++Er+RR+++ ++f  L  l+P +     +K +Ka++L  A++Y+k+Lq
  Aradu.HK2E0 162 QDHIIAERKRREKLSQRFIALSALVPGL-----QKTDKASVLGDAIKYLKQLQ 209
                  5799***********************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.12159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-17163222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-17163222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-10163209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.19E-12164213No hitNo description
SMARTSM003538.7E-15165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDISSLRGLT DLEIMEDPTY LHQWHLSSIY EPTLLPIAAA FGETLQQHSF SHPSFNSKTS  60
METSLSNIDR PTKHLKNNSW CPTKTPSEAQ FASCSTLLSF VDPNYINQLE VVKSKDEMVC  120
PKMNDTTPKD MNFQGTLGNQ YVFEASQATK HVGPRSRLSQ PQDHIIAERK RREKLSQRFI  180
ALSALVPGLQ KTDKASVLGD AIKYLKQLQE KVKALEEEQN KRKAVESVVF VKKSQLSNDA  240
EDASLEYEGI FHEALPEIEA RFCDKNVLVR IHCEKNRGVV EKSINQIEKL HLKVTNSSAM  300
TFGSWALDIT IIAQMEKGFC MTVKELVRNL RSAFASII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-15160249580Transcription factor MYC2
5gnj_B2e-15160249580Transcription factor MYC2
5gnj_E2e-15160249580Transcription factor MYC2
5gnj_F2e-15160249580Transcription factor MYC2
5gnj_G2e-15160249580Transcription factor MYC2
5gnj_I2e-15160249580Transcription factor MYC2
5gnj_M2e-15160249580Transcription factor MYC2
5gnj_N2e-15160249580Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172ERKRRE
2168173RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.HK2E0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015956179.10.0transcription factor bHLH25-like
RefseqXP_020994596.10.0transcription factor bHLH25-like
TrEMBLA0A371FE141e-166A0A371FE14_MUCPR; Transcription factor bHLH25 (Fragment)
STRINGXP_007159189.11e-151(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-62bHLH family protein