PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.HJ2Y0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SRS
Protein Properties Length: 334aa    MW: 35910.4 Da    PI: 7.5728
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.HJ2Y0genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702196.77.4e-611322713153
       DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100
                   g+++CqdCGnqakkdCah RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++ + +a+ +skr+r+++ +  +   +  +++ +     
  Aradu.HJ2Y0 132 GGGVNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQHLH-SADTSSKRHRDTHPALDTLPCAPPVPTIT----- 223
                  5789****************************************************9777655.56667788887644444444444433333..... PP

       DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                        +evss+avfrcv+vs++d  +e++aYqtav+igGhvfkGiLydqG++
  Aradu.HJ2Y0 224 -----TTEVSSSAVFRCVKVSAIDSVDEQYAYQTAVNIGGHVFKGILYDQGPQ 271
                  .....259*******************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.1E-61134271IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.7E-27136178IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.2E-25226270IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAGFFSLGGR GAGPHSNKEE EGERVAEKHH QDHHNSNSLF LFRNNEEVYN KGGFEIWPQP  60
YHQNQGFSNY YSFGVGPSTH QPRRNHNNND NSNNNSNDEG VSFCVSDEST RFGLTMMRSS  120
GGGGGTGSGG GGGGVNCQDC GNQAKKDCAH LRCRTCCKSR GFQCQTHVKS TWVPAAKRRE  180
RQQQLAALQQ QHLHSADTSS KRHRDTHPAL DTLPCAPPVP TITTTEVSSS AVFRCVKVSA  240
IDSVDEQYAY QTAVNIGGHV FKGILYDQGP QGLYTTAVVA EGSSAGGGAE PQQQLSLITA  300
ATTTAGNPFD PSSLYPAPLN AFMAGTQFFP PPKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.HJ2Y0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025612258.10.0protein SHI RELATED SEQUENCE 1
RefseqXP_025612260.10.0protein SHI RELATED SEQUENCE 1
SwissprotQ9LQZ58e-79SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A445BR800.0A0A445BR80_ARAHY; Uncharacterized protein
STRINGGLYMA06G03030.11e-106(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.12e-73SHI-related sequence 5
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]