PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.HBS6Q | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 584aa MW: 66554.5 Da PI: 8.958 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.8 | 3.5e-17 | 33 | 123 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ffk++ d++ s +++lp kf + + +k+++l d+sg++W+v+l + +++ +++GW++F +++gL+ gD++vF+++ + f +v++++ Aradu.HBS6Q 33 FFKIM--FDSNFSTIMYLPDKFKPAVAAS--VNKKIILDDKSGERWKVTL--SEAGSHLAFKEGWNKFSSDHGLERGDILVFHHVTDVHF--YVTIYD 122 78888..555556679******8777544..3468***************..999999*************************8876666..999987 PP S CS B3 99 k 99 k Aradu.HBS6Q 123 K 123 6 PP | |||||||
2 | B3 | 39.5 | 1e-12 | 506 | 573 | 23 | 88 |
.HTT---..--SEEEEEETTS-EEEEEE....EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 23 aeehggkkeesktltledesgrsWevkliy..rkksgr...yvltkGWkeFvkangLkegDfvvFkldgrs 88 ++++ k++ + ++l+d++ r W v + +kk + ++l kGW++F +an+++ gD ++F+l+++ Aradu.HBS6Q 506 CRNY---KNNRMVVILRDPQRRLWPVLYHDlhDKKMHGtkaFYLIKGWSQFYRANNVQPGDLCTFELKEEA 573 4444...345789***************445544443367899***********************98753 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.88E-21 | 30 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-20 | 30 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.47E-17 | 31 | 122 | No hit | No description |
PROSITE profile | PS50863 | 13.733 | 31 | 124 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.8E-11 | 33 | 124 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.1E-15 | 33 | 123 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.743 | 482 | 584 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-4 | 484 | 580 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-13 | 484 | 581 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-13 | 487 | 574 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.18E-13 | 493 | 581 | No hit | No description |
Pfam | PF02362 | 1.6E-10 | 499 | 573 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 584 aa Download sequence Send to blast |
MRPEALVCEE CACRCVLLHG NEKKKSSLFP PSFFKIMFDS NFSTIMYLPD KFKPAVAASV 60 NKKIILDDKS GERWKVTLSE AGSHLAFKEG WNKFSSDHGL ERGDILVFHH VTDVHFYVTI 120 YDKYACEKLC CSNTRNKTKR RRDSSVSPVR DVMLATPDQN ASVVSEPDAK KTNSQNKVVG 180 VGGTPNNVEN ISKHDKSNGS VKSTRMTENY DNTAKITARE SRVSPVNYKL CMNPVDAILC 240 DNSPSFEERF RGAAAFLSEA ELSGKRDSIR NTDRSRYDNT STCKLGERKE KNVLKREVRE 300 FQYTEDLEGD NKVAMSKKEH GFHIDGCLNT KPMFNATPNI SDATRLKSDP MATSKGKHGL 360 QIDGCPNTKH IVNNGIPRVS SAIQNGKILK KIKSEQADRN PSEECTFKDK VCAKGEMPKR 420 IKKEPRMDMT YNVSRFKDEF EARGIEVPKG LPKVIKKEFE KSSHKTEQND DNDDDSDNIQ 480 LAEVVRCVVP DHNDKFLELP TNLHQCRNYK NNRMVVILRD PQRRLWPVLY HDLHDKKMHG 540 TKAFYLIKGW SQFYRANNVQ PGDLCTFELK EEAKHIFNVD INHN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.HBS6Q |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015954503.1 | 0.0 | B3 domain-containing protein Os01g0905400-like isoform X1 | ||||
Refseq | XP_015954504.1 | 0.0 | B3 domain-containing protein Os01g0905400-like isoform X1 | ||||
TrEMBL | A0A445DWQ6 | 0.0 | A0A445DWQ6_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12476 | 28 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 1e-10 | B3 family protein |