PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.H9EK2
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 707aa    MW: 78764.3 Da    PI: 8.174
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.H9EK2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.5e-23120221199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD+vvF   + +++ 
  Aradu.H9EK2 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFL--RAENGD 213
                  89****************************986445444..8************************************************..448899 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Aradu.H9EK2 214 LCVGIRRA 221
                  9****997 PP
2Auxin_resp112.34.7e-37292375183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  a++ a+ +++FevvY+Prast+eF++k+++v +a++++++ GmRfkm fetedss++++ +Gtv++v+ +dp+rWpnS+Wr L+
  Aradu.H9EK2 292 AVSMAARNQAFEVVYSPRASTPEFCIKASSVTDAMRIQWCSGMRFKMPFETEDSSRISWfMGTVASVQVADPIRWPNSPWRILQ 375
                  5778999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-30105222IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-37112223IPR015300DNA-binding pseudobarrel domain
CDDcd100173.53E-21119220No hitNo description
PROSITE profilePS5086312.971120222IPR003340B3 DNA binding domain
PfamPF023627.8E-22120221IPR003340B3 DNA binding domain
SMARTSM010196.1E-22120222IPR003340B3 DNA binding domain
PfamPF065074.9E-32292375IPR010525Auxin response factor
PROSITE profilePS5174518.661595678IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
KSLQRRREMK EGEKSLDPQL WHACAGSMVQ MPQVNSKVFY FPQGHAEHAQ TAIDLSTPSL  60
RVPPLIPCRV ATVRFMADPE TDEVFAKIKL VPLKSSELDQ NDNTLEGEVV VENQEKPASF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSAEPPVQTV VAKDVHGELW KFRHIYRGTP  180
RRHLLTTGWS TFVNQKKLVA GDSVVFLRAE NGDLCVGIRR AKRGIGIGIG GGCEGSSLWS  240
SASSGNGNSN GGPYGALSMF LREENNKLLR NSNGRCSYSS SSRVRAEDVV EAVSMAARNQ  300
AFEVVYSPRA STPEFCIKAS SVTDAMRIQW CSGMRFKMPF ETEDSSRISW FMGTVASVQV  360
ADPIRWPNSP WRILQVTWDE PDLLQNVKRV SPWLVELVSN MPIINISPFS PPRKKLRFPQ  420
HPDFPQDIQF TSLPTFPGNY IGPNSPMYCL SENAPASIQG TRHAQIGISL SDFHLSNKLQ  480
LGLLPTSIHR LDVHNRDMTN HDKSKESLSC LLTMGKSNKS LESSDNNVKT HQFLLFGQPI  540
LTEQQISRTG KDSPDETKIK EKCFLGEAKF AVSQHIPPGK ASNAAEFSWQ IGLETSHCKV  600
FLESEDVGRT LDLSSLGSYE ELYRKLANMF DMERSEIFNH VLYRDETSAV KKIGEEPFSE  660
FMKTAKRLTI LMDSSSKNIT RAWITGSRSG EHGIDASNKT GPLSIFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-771639651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.H9EK2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015952403.10.0auxin response factor 10-like
RefseqXP_020992898.10.0auxin response factor 10-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A445AA040.0A0A445AA04_ARAHY; Auxin response factor
STRINGGLYMA12G08110.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]