PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.H8K0T | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 163aa MW: 19119.1 Da PI: 8.0598 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.9 | 4.9e-15 | 62 | 154 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgrsefelvvkvf 97 ffkv+ ++s l lpk++++ +k++ + + +l++ +g W+vk + ++++++ +GWkeFv++ng++ + ++vF dg+s+f +k+f Aradu.H8K0T 62 FFKVF--LPQFSSEKLLLPKEHVALTRMKERVPEEFMLRNGRGGAWRVKT--SCIGEKVYFDDGWKEFVRDNGIQeACVIIVFNPDGSSTF--EFKIF 153 88999..77899999********88899999999****************..888888*****************4455679998887888..88887 PP - CS B3 98 r 98 + Aradu.H8K0T 154 E 154 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-18 | 55 | 158 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-16 | 57 | 158 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.097 | 60 | 156 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.27E-9 | 61 | 153 | No hit | No description |
SMART | SM01019 | 1.1E-8 | 62 | 156 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.9E-13 | 62 | 155 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
FKFLFFAKPQ QILLFFLSSF ASSTLKESTF VEIWTIFFSR QIKNFNIHFF DMMNTSAEQS 60 SFFKVFLPQF SSEKLLLPKE HVALTRMKER VPEEFMLRNG RGGAWRVKTS CIGEKVYFDD 120 GWKEFVRDNG IQEACVIIVF NPDGSSTFEF KIFESSMCEK TQT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.H8K0T |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025642221.1 | 1e-94 | B3 domain-containing protein REM20 | ||||
TrEMBL | A0A445A8V7 | 2e-93 | A0A445A8V7_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12852 | 11 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06160.2 | 3e-12 | B3 family protein |