PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.H6T95
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 500aa    MW: 56124.7 Da    PI: 7.0082
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.H6T95genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.24.4e-2538138198
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+l++sd++++g +++ +k+a+e+       ++++++  +l+ +d +g +W++k+iyr++++r++lt+GW+ Fv a++L +gD++vF   + ++++
  Aradu.H6T95  38 FCKTLSTSDTSTHGGFSVLRKHANEClpqldmtMENPTQ--ELVAKDIHGVEWKFKHIYRGHPKRHLLTTGWSAFVAAKKLVAGDSFVFL--RGENGQ 131
                  99****************************987555544..8************************************************..448999 PP

                  .EEEEE- CS
           B3  92 lvvkvfr 98 
                  l+v+v+r
  Aradu.H6T95 132 LRVGVRR 138
                  9****98 PP
2Auxin_resp89.75.4e-30164243183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+h++ t+++F v+Y+Pr+  s+F+v+++k+ +++++ + +GmRfkm+ e+ed   +r+ Gt++gv d ++ +WpnS+WrsLk
  Aradu.H6T95 164 ASHSVMTSTMFVVYYKPRT--SQFIVSLNKYIDTMNNDFKIGMRFKMRHEGEDPLDKRFCGTIIGVGD-ESREWPNSQWRSLK 243
                  679999************6..9**********************************************.888*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-3826165IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-3930152IPR015300DNA-binding pseudobarrel domain
CDDcd100172.32E-2137138No hitNo description
PfamPF023622.4E-2238138IPR003340B3 DNA binding domain
SMARTSM010191.9E-2338140IPR003340B3 DNA binding domain
PROSITE profilePS5086312.22438140IPR003340B3 DNA binding domain
PfamPF065071.9E-28164243IPR010525Auxin response factor
SuperFamilySSF542771.28E-10411493No hitNo description
PfamPF023091.4E-6414453IPR033389AUX/IAA domain
PROSITE profilePS5174525.61417498IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
METDEVYARI TLQPSSDNDP LDPNPICSEK PKQKFYSFCK TLSTSDTSTH GGFSVLRKHA  60
NECLPQLDMT MENPTQELVA KDIHGVEWKF KHIYRGHPKR HLLTTGWSAF VAAKKLVAGD  120
SFVFLRGENG QLRVGVRRLN PPQSPTPSSV VSTQNMRLGV IVTASHSVMT STMFVVYYKP  180
RTSQFIVSLN KYIDTMNNDF KIGMRFKMRH EGEDPLDKRF CGTIIGVGDE SREWPNSQWR  240
SLKVQWDEPA TMQRPDRVSC WEIEPLVTSP LNTIQPMAKG KRSRHAEASS SAASGSKESQ  300
VATIWQPPHL NGNGNSSQDP ENNKAVVPAG PAGEGPARDH NEDRKKGMDC WLFGVNLTSS  360
YSNVVTPLEK ELWCEASTIL HCGPKESIIV GACETEKVQS LNNHSLSNKQ GHVPSMRTRT  420
KVKMEGVAVG RAIDLTTLNG YDELIVELEK MFDIEGEIIS QKKWAVTFTD EENDLMLLGD  480
DLWQDFCKMV KRIFICSKED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-113226687355Auxin response factor 1
4ldw_A1e-113226687355Auxin response factor 1
4ldw_B1e-113226687355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.H6T95
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025615971.10.0auxin response factor 18 isoform X2
SwissprotQ9C5W91e-171ARFR_ARATH; Auxin response factor 18
SwissprotQ9ZPY61e-171ARFK_ARATH; Auxin response factor 11
TrEMBLA0A445ACI50.0A0A445ACI5_ARAHY; Auxin response factor
STRINGGLYMA16G02650.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.11e-159auxin response factor 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]