PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.GUV6V
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 303aa    MW: 34559.7 Da    PI: 5.1799
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.GUV6VgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.53.5e-28958150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l  +s
  Aradu.GUV6V  9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLNHFS 58
                 79********************************************9997 PP
2K-box26.92.1e-1099167977
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 
                  + +++ e+lqqe+++L ++++  + ++R +  + L+  s++eL++ e++L + l+++ ++K+ ll +++
  Aradu.GUV6V  99 VINSEIEELQQEVSRLHQQLQLAEDQIRAYEPDPLKMTSMEELESGEKNLMETLTRVMQRKEYLLSSHL 167
                  667899********************************************************9998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.969161IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-38160IPR002100Transcription factor, MADS-box
CDDcd002659.80E-36258No hitNo description
SuperFamilySSF554551.57E-26261IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-263859IPR002100Transcription factor, MADS-box
PfamPF014863.0E-7103167IPR002487Transcription factor, K-box
PROSITE profilePS512977.054104205IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLNHFSGK  60
RSAVNFPEPH YGSIFYLLRT LQQLRNENDI ALQLANPGVI NSEIEELQQE VSRLHQQLQL  120
AEDQIRAYEP DPLKMTSMEE LESGEKNLME TLTRVMQRKE YLLSSHLPTY DPSTIQGMAS  180
TFENVGWLQN GTQNHNQIFD ASTPLDPLRD LQSSIYDPFP QGTNSQSDTR NIGECHVTNQ  240
NDTWPQGYTL YSHMQHEMVG PDVSNMMTTH GQMNLPITAS NLQPSNNEAG EYDCKPQNQL  300
NTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-15170176Myocyte-specific enhancer factor 2B
1tqe_Q1e-15170176Myocyte-specific enhancer factor 2B
1tqe_R1e-15170176Myocyte-specific enhancer factor 2B
1tqe_S1e-15170176Myocyte-specific enhancer factor 2B
3mu6_A5e-16258157Myocyte-specific enhancer factor 2A
3mu6_B5e-16258157Myocyte-specific enhancer factor 2A
3mu6_C5e-16258157Myocyte-specific enhancer factor 2A
3mu6_D5e-16258157Myocyte-specific enhancer factor 2A
6c9l_A1e-15170176Myocyte-specific enhancer factor 2B
6c9l_B1e-15170176Myocyte-specific enhancer factor 2B
6c9l_C1e-15170176Myocyte-specific enhancer factor 2B
6c9l_D1e-15170176Myocyte-specific enhancer factor 2B
6c9l_E1e-15170176Myocyte-specific enhancer factor 2B
6c9l_F1e-15170176Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.GUV6V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020984465.10.0agamous-like MADS-box protein AGL104
SwissprotQ9LM464e-98AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A371E3B21e-156A0A371E3B2_MUCPR; Agamous-like MADS-box protein (Fragment)
TrEMBLA0A445C9J01e-156A0A445C9J0_ARAHY; Uncharacterized protein
STRINGXP_004490359.11e-150(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85252735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-100AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]