PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.GUI8I
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SRS
Protein Properties Length: 368aa    MW: 39181.9 Da    PI: 7.3018
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.GUI8IgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702222.87.1e-691322953154
       DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.....kskkqsalsstklssae 95 
                  +g++sCqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpa+krrerqqqla+ ++++    a++ +kr+r++       ++ s+++s++ ss++
  Aradu.GUI8I 132 AGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQQQLASIQQQQLL--AADVPKRQRDHasstrLPTNPSSSASASGSSSS 227
                  6899***************************************************99777654..677777777772222222222222333333333 PP

       DUF702  96 skkeletss..............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                  s++     +              +P+ vss+a frcvrvs++dd e+e+aYqtav+igGhvfkGiLydqG+++
  Aradu.GUI8I 228 SRR-----NyllasclvlswmenFPAVVSSPAEFRCVRVSGIDDTEDEYAYQTAVNIGGHVFKGILYDQGPDH 295
                  333.....24556699999999*************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.1E-66134294IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.5E-27136178IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.9E-27246293IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MAGLFSLGGG SSSSSGRGGR GNTNQQQQQH DQHQQHAEIP PSDTFYWYKN EDVSSYRGGL  60
ELWNHHHHHH QPEHDLIPQA RPLFHQDLYS SAAALGVGPT TVSDDQSPSR SAFLVTASAV  120
GSGAASGAGS GAGGISCQDC GNQAKKDCPH MRCRTCCKSR GFDCQTHVKS TWVPASKRRE  180
RQQQLASIQQ QQLLAADVPK RQRDHASSTR LPTNPSSSAS ASGSSSSSRR NYLLASCLVL  240
SWMENFPAVV SSPAEFRCVR VSGIDDTEDE YAYQTAVNIG GHVFKGILYD QGPDHATTTT  300
TNSSSYVAGD TSSTGAAAHH PNLNLIAPNT NTTTSALVSA AHTTQQLVDP SSMYPPPLST  360
FMAGSSAI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.GUI8I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0066431e-36AP006643.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT34A19, TM0249, complete sequence.
GenBankAP0067121e-36AP006712.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT17E09, TM0627, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015964188.10.0protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A444WRD70.0A0A444WRD7_ARAHY; Uncharacterized protein
STRINGXP_007158606.11e-104(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.13e-64Lateral root primordium (LRP) protein-related