PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.GMN2P | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 573aa MW: 65041.5 Da PI: 5.237 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.6 | 8e-12 | 391 | 434 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ +Lr+l+P + Kl+ a+iL A+e++k+Lq Aradu.GMN2P 391 VAERKRRKKLNDRLYNLRSLVPRiS------KLDRASILGDAIEFVKDLQ 434 68*********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 8.3E-17 | 66 | 203 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 2.54E-13 | 383 | 438 | No hit | No description |
PROSITE profile | PS50888 | 15.294 | 384 | 433 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-16 | 387 | 448 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.7E-15 | 390 | 439 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-9 | 391 | 434 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-16 | 391 | 449 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.002 | 517 | 560 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048657 | Biological Process | anther wall tapetum cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MDLSFCFSCF LFVCYSISLL LVLVKGIISS ILKHFAFGSS KKDFYYHLLP SGDKNMNMMM 60 MQNLIERLRP LVGLNGWDYC VYWKLSEDQR FVEWLGCCCG GTDQNNNVGE DIHIFPCRDT 120 MFSHPRTNHC YLLSQLPTSI SIIDSGIHAQ TLLTNQPNWV NYSPNILQET IGTQVLIPVP 180 GGLVELFVTK QVPEDHQVID FVTAQCIVLV EQEAANNSTS FNMQSNVVGD DNNNNHNNNN 240 NENQVMMNNN NNSNNQFVLT TAPETSPHDE IPITLCSSPL NFMQQFRTMN KNNDNNNNNN 300 AFSEEYQGSI FLHENQNNNN QPMKAAAMEE EEEEEQQVGT KENNNNNKNE GGVVGVGRSD 360 SMSDCSDQNE EEEDGKYRRR NGKGNQSKNL VAERKRRKKL NDRLYNLRSL VPRISKLDRA 420 SILGDAIEFV KDLQKQVKDL QDELEDNNNN SDTTAVDHHD SSNQFLDHFG ASYVVPNHKH 480 MQQDAVDATT LTMDKQHSQQ MEPQVEVAVI DGKEYFVKVF CEHRAGGFVK LMEALNTLGM 540 DVVHATVTSH KGLVSNVFKV EVRYHLTHHS KQN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 377 | 398 | RRRNGKGNQSKNLVAERKRRKK |
2 | 392 | 399 | ERKRRKKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.GMN2P |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015941767.2 | 0.0 | transcription factor ABORTED MICROSPORES | ||||
TrEMBL | A0A444XUI7 | 0.0 | A0A444XUI7_ARAHY; Uncharacterized protein | ||||
STRING | XP_004497179.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4225 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 8e-58 | bHLH family protein |