PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.GIP2Q
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family AP2
Protein Properties Length: 272aa    MW: 29985.2 Da    PI: 9.1445
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.GIP2QgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.18.8e-13148205155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d+ +++  ++     +g f+ta  Aa+a+++a+ k++g
  Aradu.GIP2Q 148 SQYRGVTFYRRTGRWESHIWDCGKQCvpMKfVLGLVGGFDTAHAAARAYDRAAIKFRG 205
                  78*******************86677885558889********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-12148213IPR016177DNA-binding domain
PfamPF008472.8E-4148205IPR001471AP2/ERF domain
SMARTSM003805.2E-22149219IPR001471AP2/ERF domain
PROSITE profilePS5103215.659149213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-13149213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MFDLNLNADS TQHDDSPVLL GEKIPEASSG TSNSSVVNAE GSSNGGGAGD DDSCSTRATG  60
SGDVYTFNFD ILKVEGGSDN SVATKELFPV SAGNWQGQAS TSSIPARKSW MDLSLDQHRG  120
ESAEKQQQQQ QQPPQAKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQCVPMKFVL  180
GLVGGFDTAH AAARAYDRAA IKFRGLDADI NFNLVDYEDD LKQMKNLSKE EFVHILRRQS  240
TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.GIP2Q
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310863e-83KT031086.1 Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015935663.11e-161ethylene-responsive transcription factor RAP2-7 isoform X2
SwissprotQ9SK034e-81RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A445BVR61e-159A0A445BVR6_ARAHY; Uncharacterized protein
STRINGXP_004487148.11e-117(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.21e-72related to AP2.7