PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.G5P3T
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 487aa    MW: 55079.3 Da    PI: 4.7129
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.G5P3TgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS122.93.8e-381773001127
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l+e L++cA+ ++++d+e +++l+++l++++s +gdp+qRl ay++e L ar+a ++s++ykal++se +     e l+++++++e++P++kf+++ a
  Aradu.G5P3T 177 LKEMLYTCAKSMAENDMETTDWLISELRKMVSISGDPLQRLGAYMLESLIARMACTGSKIYKALKCSEPT---GNELLSYMHVLYEICPYFKFGYMSA 271
                  5789*****************************************************************9...99*********************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpa 127
                  N aI ea+++e++vHiiDf+isqG+Q pa
  Aradu.G5P3T 272 NGAIAEAMKEESHVHIIDFQISQGTQVPA 300
                  **************************886 PP

2GRAS219.71.5e-67301487187374
         GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                  ++++le+L+++++Ea+aVn++++lh+++desv++ ++rd++L+l k+lsPkvv++veqe ++n+++Fl rf+ +l+yy a+f+s++a lpre++eri+
  Aradu.G5P3T 301 SEVQLEDLELRTNEAVAVNFAIMLHHVPDESVTSLNPRDRLLRLAKNLSPKVVTLVEQEFSTNNAQFLPRFMVTLNYYLAVFESIDAVLPREHKERIN 398
                  6899********************************************************************************************** PP

         GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  vE+++l+re+vn+vaceg+er+erhe l+kWr+r+++aGF p+pls+++++++k+ll+ ++++ y++ee++g+l+lgW+++ L++ +aWr
  Aradu.G5P3T 399 VEQHCLAREVVNLVACEGEERVERHELLNKWRRRFMAAGFAPYPLSSFVNASIKTLLESYPGH-YTLEERDGTLYLGWMNQVLIVSCAWR 487
                  *************************************************************77.*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.106151287IPR005202Transcription factor GRAS
PfamPF035141.3E-35177300IPR005202Transcription factor GRAS
PROSITE profilePS5098527.441288468IPR005202Transcription factor GRAS
PfamPF035145.1E-65301487IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MQTSQEHELP YGSGRFYIEP AENQESYCFP SSENLENYSS SDNSNQATYP LVKISDPYCT  60
LESASTSNIP GQNSASTANF SPNGSPVSKL EPKSHVLRPQ HSLETTNGSP EINSCLTHDF  120
DDLRDKIREL ETAMLGPDTS TLNMYDIVVP EPEEPDSFLV AAEKWKKTME IISRGDLKEM  180
LYTCAKSMAE NDMETTDWLI SELRKMVSIS GDPLQRLGAY MLESLIARMA CTGSKIYKAL  240
KCSEPTGNEL LSYMHVLYEI CPYFKFGYMS ANGAIAEAMK EESHVHIIDF QISQGTQVPA  300
SEVQLEDLEL RTNEAVAVNF AIMLHHVPDE SVTSLNPRDR LLRLAKNLSP KVVTLVEQEF  360
STNNAQFLPR FMVTLNYYLA VFESIDAVLP REHKERINVE QHCLAREVVN LVACEGEERV  420
ERHELLNKWR RRFMAAGFAP YPLSSFVNAS IKTLLESYPG HYTLEERDGT LYLGWMNQVL  480
IVSCAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-3518448626378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.G5P3T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020972791.10.0LOW QUALITY PROTEIN: scarecrow-like protein 21
SwissprotQ9S7H51e-146SCL21_ARATH; Scarecrow-like protein 21
TrEMBLA0A151QXN40.0A0A151QXN4_CAJCA; Scarecrow-like protein 5
STRINGGLYMA02G46730.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.11e-148SCARECROW-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]