PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.G5P3T | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GRAS | ||||||||
Protein Properties | Length: 487aa MW: 55079.3 Da PI: 4.7129 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 122.9 | 3.8e-38 | 177 | 300 | 1 | 127 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l+e L++cA+ ++++d+e +++l+++l++++s +gdp+qRl ay++e L ar+a ++s++ykal++se + e l+++++++e++P++kf+++ a Aradu.G5P3T 177 LKEMLYTCAKSMAENDMETTDWLISELRKMVSISGDPLQRLGAYMLESLIARMACTGSKIYKALKCSEPT---GNELLSYMHVLYEICPYFKFGYMSA 271 5789*****************************************************************9...99*********************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpa 127 N aI ea+++e++vHiiDf+isqG+Q pa Aradu.G5P3T 272 NGAIAEAMKEESHVHIIDFQISQGTQVPA 300 **************************886 PP | |||||||
2 | GRAS | 219.7 | 1.5e-67 | 301 | 487 | 187 | 374 |
GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++++le+L+++++Ea+aVn++++lh+++desv++ ++rd++L+l k+lsPkvv++veqe ++n+++Fl rf+ +l+yy a+f+s++a lpre++eri+ Aradu.G5P3T 301 SEVQLEDLELRTNEAVAVNFAIMLHHVPDESVTSLNPRDRLLRLAKNLSPKVVTLVEQEFSTNNAQFLPRFMVTLNYYLAVFESIDAVLPREHKERIN 398 6899********************************************************************************************** PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 vE+++l+re+vn+vaceg+er+erhe l+kWr+r+++aGF p+pls+++++++k+ll+ ++++ y++ee++g+l+lgW+++ L++ +aWr Aradu.G5P3T 399 VEQHCLAREVVNLVACEGEERVERHELLNKWRRRFMAAGFAPYPLSSFVNASIKTLLESYPGH-YTLEERDGTLYLGWMNQVLIVSCAWR 487 *************************************************************77.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 14.106 | 151 | 287 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-35 | 177 | 300 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 27.441 | 288 | 468 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.1E-65 | 301 | 487 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MQTSQEHELP YGSGRFYIEP AENQESYCFP SSENLENYSS SDNSNQATYP LVKISDPYCT 60 LESASTSNIP GQNSASTANF SPNGSPVSKL EPKSHVLRPQ HSLETTNGSP EINSCLTHDF 120 DDLRDKIREL ETAMLGPDTS TLNMYDIVVP EPEEPDSFLV AAEKWKKTME IISRGDLKEM 180 LYTCAKSMAE NDMETTDWLI SELRKMVSIS GDPLQRLGAY MLESLIARMA CTGSKIYKAL 240 KCSEPTGNEL LSYMHVLYEI CPYFKFGYMS ANGAIAEAMK EESHVHIIDF QISQGTQVPA 300 SEVQLEDLEL RTNEAVAVNF AIMLHHVPDE SVTSLNPRDR LLRLAKNLSP KVVTLVEQEF 360 STNNAQFLPR FMVTLNYYLA VFESIDAVLP REHKERINVE QHCLAREVVN LVACEGEERV 420 ERHELLNKWR RRFMAAGFAP YPLSSFVNAS IKTLLESYPG HYTLEERDGT LYLGWMNQVL 480 IVSCAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-35 | 184 | 486 | 26 | 378 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.G5P3T |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020972791.1 | 0.0 | LOW QUALITY PROTEIN: scarecrow-like protein 21 | ||||
Swissprot | Q9S7H5 | 1e-146 | SCL21_ARATH; Scarecrow-like protein 21 | ||||
TrEMBL | A0A151QXN4 | 0.0 | A0A151QXN4_CAJCA; Scarecrow-like protein 5 | ||||
STRING | GLYMA02G46730.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1653 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04890.1 | 1e-148 | SCARECROW-like 21 |
Publications ? help Back to Top | |||
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