PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.G1MD8

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

GRAS

Protein Properties

Length: 609aa MW: 68929.7 Da PI: 6.2124

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.G1MD8	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	349.2	6.8e-107	237	606	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL++cA+avss++ +a++lL +++ ++sp+gd++qRl ++f++AL+ar+a++++++ +al++++ s s+ ++a+k+f ++P+ kf+ Aradu.G1MD8 237 LRSLLMQCAQAVSSDNRPMAKELLMQIKLHSSPTGDATQRLSHCFVNALEARMAGTGTHIHSALSTKRPS---ASDMVKAYKMFTLACPFDKFGIRFS 331 689***********************************************************999999...8999*************9999 PP GRAS 99 NqaIle.avegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 + I + a+eg +++Hi+ f+i +G++Wp L+ L+ p+gpp+lRiTg++ p +le+tg+ La+++e++++pfefn++vak++e +++e+L+ Aradu.G1MD8 332 VNSIGDlAMEGVQTLHIVEFGIRYGFKWPGLMYRLSRLPSGPPKLRITGIEYPL--PGLKLEQTGQCLARYCERFNIPFEFNAIVAKKWERIKVEDLK 427 999988579999************************************66..99************************************ PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 ++++E +aVn++++ ++l+de+v le++rd+vL+l+++ +P+++v+ + +++++ F++rf ea+ +ysa+fd+l+++++r++ r ++E++++g+e Aradu.G1MD8 428 IRENEFVAVNCMFRFENLHDETVVLENPRDSVLELIRKANPNIFVHGIINGNYDAAFFVTRFKEAMFHYSAMFDMLDNTVARDDPIRLMYEEAIFGKE 525 ********************************************************************************************** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 ++nvvaceg+er+er +++kW+ r ++aGF++++l+e++ ++ k +lr+ + + ++++ + ++l++gWk+r L++ S+W Aradu.G1MD8 526 VMNVVACEGNERIERPHNYKKWQVRNTRAGFRQLSLDEQMIEKFKDMLRNEGyHRDFMLHADGKWLLQGWKGRILYASSCW 606 *********************************************9999999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.04	211	586	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.4E-104	237	606	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence Send to blast
MADPSHGGNP ATDFTTSREE NPAPFDESDF SAAALKYIDE MLMEEDIDEE YNMFQHSSAL 60 LAAEKSLYDA IGQRYPSSAS TLWSSTSSIQ HHNYYPNVES PGDSYSSTSS GSTCGTTNTS 120 SSADYFWSGF DLSMIPLMPN TLPFPDTFNF QSNPSSTTPQ SNHRSDFTAT NNRSSSKQSA 180 LYMDDTELSE FFDKVLIGAG LGRGSSQADE GIPKDSRGKK SRARKRNDKN DDEVIDLRSL 240 LMQCAQAVSS DNRPMAKELL MQIKLHSSPT GDATQRLSHC FVNALEARMA GTGTHIHSAL 300 STKRPSASDM VKAYKMFTLA CPFDKFGIRF SVNSIGDLAM EGVQTLHIVE FGIRYGFKWP 360 GLMYRLSRLP SGPPKLRITG IEYPLPGLKL EQTGQCLARY CERFNIPFEF NAIVAKKWER 420 IKVEDLKIRE NEFVAVNCMF RFENLHDETV VLENPRDSVL ELIRKANPNI FVHGIINGNY 480 DAAFFVTRFK EAMFHYSAMF DMLDNTVARD DPIRLMYEEA IFGKEVMNVV ACEGNERIER 540 PHNYKKWQVR NTRAGFRQLS LDEQMIEKFK DMLRNEGYHR DFMLHADGKW LLQGWKGRIL 600 YASSCWVPA

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence Send to blast

MADPSHGGNP ATDFTTSREE NPAPFDESDF SAAALKYIDE MLMEEDIDEE YNMFQHSSAL  60
LAAEKSLYDA IGQRYPSSAS TLWSSTSSIQ HHNYYPNVES PGDSYSSTSS GSTCGTTNTS  120
SSADYFWSGF DLSMIPLMPN TLPFPDTFNF QSNPSSTTPQ SNHRSDFTAT NNRSSSKQSA  180
LYMDDTELSE FFDKVLIGAG LGRGSSQADE GIPKDSRGKK SRARKRNDKN DDEVIDLRSL  240
LMQCAQAVSS DNRPMAKELL MQIKLHSSPT GDATQRLSHC FVNALEARMA GTGTHIHSAL  300
STKRPSASDM VKAYKMFTLA CPFDKFGIRF SVNSIGDLAM EGVQTLHIVE FGIRYGFKWP  360
GLMYRLSRLP SGPPKLRITG IEYPLPGLKL EQTGQCLARY CERFNIPFEF NAIVAKKWER  420
IKVEDLKIRE NEFVAVNCMF RFENLHDETV VLENPRDSVL ELIRKANPNI FVHGIINGNY  480
DAAFFVTRFK EAMFHYSAMF DMLDNTVARD DPIRLMYEEA IFGKEVMNVV ACEGNERIER  540
PHNYKKWQVR NTRAGFRQLS LDEQMIEKFK DMLRNEGYHR DFMLHADGKW LLQGWKGRIL  600
YASSCWVPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-46	226	608	8	380	Protein SCARECROW
5b3h_A	7e-46	226	608	7	379	Protein SCARECROW
5b3h_D	7e-46	226	608	7	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.G1MD8

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015935564.1	0.0	scarecrow-like protein 14
Refseq	XP_020984791.1	0.0	scarecrow-like protein 14
Refseq	XP_020984792.1	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	1e-169	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A445BVP4	0.0	A0A445BVP4_ARAHY; Uncharacterized protein
STRING	XP_007132057.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-171	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]