PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.G1BFV | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | WOX | ||||||||
Protein Properties | Length: 260aa MW: 29231.5 Da PI: 6.2571 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67 | 2.5e-21 | 77 | 137 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + + +ps+e+++e++++l +++e++V++WFqNrRa+ k+ Aradu.G1BFV 77 RQRWTPTSVQLQILERIFDQgTGTPSKEKIKEITAELskhgQISETNVYNWFQNRRARSKR 137 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 103.5 | 1.4e-33 | 76 | 139 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt+ Q++iLe+++++G+ tP+ke+i++itaeL+++G+i+++NV++WFQNr+aR+++kq Aradu.G1BFV 76 SRQRWTPTSVQLQILERIFDQGTGTPSKEKIKEITAELSKHGQISETNVYNWFQNRRARSKRKQ 139 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-17 | 71 | 142 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.965 | 73 | 138 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-14 | 75 | 142 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.1E-18 | 75 | 141 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.08E-14 | 77 | 139 | No hit | No description |
Pfam | PF00046 | 3.2E-19 | 77 | 137 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MYVKVMTDEQ LETLRKQIAV YATICEKLIE MHKTLSAQQD LAGKRLEKKD GVDGETGLGS 60 MYCDPLMASS GHKITSRQRW TPTSVQLQIL ERIFDQGTGT PSKEKIKEIT AELSKHGQIS 120 ETNVYNWFQN RRARSKRKQQ NVAASNNTNT NTESEVETEV DSKDKKTKPE EFQSQQSLAN 180 VAAQNVCFHN RDLPYLNPES NKSDSIFPSD GSLTSTSNFD HMPVFNGMIA NSRSDYLAGK 240 MEAPDSYNIY HEGGDYNITG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 138 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00617 | PBM | Transfer from AT4G35550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.G1BFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025622834.1 | 0.0 | WUSCHEL-related homeobox 13 | ||||
Refseq | XP_025622835.1 | 0.0 | WUSCHEL-related homeobox 13 | ||||
Swissprot | O81788 | 2e-79 | WOX13_ARATH; WUSCHEL-related homeobox 13 | ||||
TrEMBL | A0A445B8F4 | 0.0 | A0A445B8F4_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA18G52491.1 | 1e-132 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 4e-78 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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