PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.G13NV | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 215aa MW: 25509.5 Da PI: 10.6729 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.9 | 1.8e-13 | 12 | 89 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 lp kf+e++g++ s l l+ ++g +W+v+ ++++g+++++kGWk Fv L+ g + F+++ + ++ v +f++ Aradu.G13NV 12 KLPIKFTEKYGSS--LSNPLYLKPLDGTEWRVEW--TNHDGGILFKKGWKAFVAYYSLDHGHLLWFEYNI-GTSHMEVYIFDT 89 69********977..6778***************..*******************************963.556679999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.773 | 1 | 90 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0036 | 7 | 90 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.0E-16 | 11 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-16 | 12 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.2E-10 | 12 | 89 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.06E-11 | 13 | 88 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MVANTRFITL QKLPIKFTEK YGSSLSNPLY LKPLDGTEWR VEWTNHDGGI LFKKGWKAFV 60 AYYSLDHGHL LWFEYNIGTS HMEVYIFDTS CLQIEYAAND QIKEQLLRRS KRNRRRKDSK 120 SPVRLSPTRP ESMKEAKKFK WEKPSFIKIT QRSQTRAPCS LFKPVTHGIQ LTVIPLSWIK 180 DSDPRKSRPN LSVIFYRKYF KKNQQDVKLQ FRKES |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.G13NV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015934490.1 | 6e-73 | B3 domain-containing protein Os12g0591400-like | ||||
TrEMBL | A0A444ZSW0 | 7e-60 | A0A444ZSW0_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-12 | B3 family protein |