PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.G05M1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ARF | ||||||||
Protein Properties | Length: 683aa MW: 76863.7 Da PI: 6.2632 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.7 | 5.2e-24 | 117 | 218 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+kvlt sd++++g +++ +k+a+e+ +++++ +++l+ +d++g +W++k+i+r++++r+++t+GW+ Fv +++L +gD++vF + +++el+ Aradu.G05M1 117 FCKVLTASDTSTHGGFSVLRKHATEClpaldMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLITTGWSTFVASKRLVAGDTFVFL--RGHNGELR 212 99****************************977777888*************************************************..3489999* PP EEEE-S CS B3 94 vkvfrk 99 v+++r+ Aradu.G05M1 213 VGLRRN 218 ***997 PP | |||||||
2 | Auxin_resp | 89.9 | 4.4e-30 | 243 | 324 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedss..errlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr +F+v ++k+++a+++k++v mRfkm+fe+ed + err+sGt+vgv+d++p W nS+WrsLk Aradu.G05M1 243 ASHAVATQTLFVVYYKPRR--CQFIVGLNKYLEAMNHKFAVAMRFKMRFEGEDTPenERRFSGTIVGVEDISP-YWVNSNWRSLK 324 789***************6..89******************************86226889***********9.9********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.5E-38 | 109 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.7E-40 | 110 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.85E-20 | 115 | 217 | No hit | No description |
PROSITE profile | PS50863 | 12.252 | 117 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-22 | 117 | 218 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.9E-23 | 117 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-28 | 243 | 324 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.4E-11 | 545 | 655 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.393 | 571 | 652 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 8.34E-13 | 575 | 647 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 683 aa Download sequence Send to blast |
MLNRRGGEED ELYEQLWEAC AGPHVDVPRS GQRVFYFPQG HMEQLEESTN QELNQRIPVF 60 KLPTKILCRV VNVHLLAEQE TDEVYAQITL VPESNQAEPT SPDLCPAELP RPQNHSFCKV 120 LTASDTSTHG GFSVLRKHAT ECLPALDMSQ PTPTQELVAK DLHGYEWRFK HIFRGQPRRH 180 LITTGWSTFV ASKRLVAGDT FVFLRGHNGE LRVGLRRNTP QPSSMPSSVI SSQSMHLGVL 240 ATASHAVATQ TLFVVYYKPR RCQFIVGLNK YLEAMNHKFA VAMRFKMRFE GEDTPENERR 300 FSGTIVGVED ISPYWVNSNW RSLKVLWDEP ASVPRPDRVS PWEIEPLMAS VVTSSLQSPV 360 LKNKRPRLPG EVHELDTRSA ASTFWDAALA HSDVTQLSVI AESNMSDGTH VWNHKLIDNS 420 KGSYNAMLRI QTEAIRVSSP HSSGPSQLFQ DTTFDDGKRL NNNDHLLDQV DKEHKMETAT 480 SCRLFGIELI DHAKNSPAVE KASSIANASG VTNEGSVNTM SRTDADQNSD IVKTSNKERK 540 HEEPQQVSKR ETQSKQICSR SCTKVNVCIV ETCEKVQMQG VAVGRAIDLT MLEGYDQLVE 600 ELEKLFDIKG ELQHRNTWQI VFTDDEGDMM LVGDDPWPEF CNMVRRIFIC SSQDVKKMSS 660 VRTKLPLSLT EEETVISSDT AGT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-163 | 10 | 347 | 17 | 355 | Auxin response factor 1 |
4ldw_A | 1e-163 | 10 | 347 | 17 | 355 | Auxin response factor 1 |
4ldw_B | 1e-163 | 10 | 347 | 17 | 355 | Auxin response factor 1 |
4ldx_A | 1e-163 | 10 | 347 | 17 | 355 | Auxin response factor 1 |
4ldx_B | 1e-163 | 10 | 347 | 17 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.G05M1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015960576.1 | 0.0 | auxin response factor 9 | ||||
Refseq | XP_015960577.1 | 0.0 | auxin response factor 9 | ||||
Refseq | XP_025695399.1 | 0.0 | auxin response factor 9 isoform X1 | ||||
Refseq | XP_025695400.1 | 0.0 | auxin response factor 9 isoform X1 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A444ZNN2 | 0.0 | A0A444ZNN2_ARAHY; Auxin response factor | ||||
STRING | GLYMA03G17450.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1511 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |