PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.FTT59
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 855aa    MW: 94829.6 Da    PI: 6.6648
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.FTT59genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.98.1e-23127226199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv a++L +gD+v+F   ++   +
  Aradu.FTT59 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVGAKRLVAGDSVLFI--WQ--NQ 218
                  99*****************************8544444..48***********************************************9..53..34 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  Aradu.FTT59 219 LLLGIRRA 226
                  58888886 PP
2Auxin_resp118.26.9e-39251334183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld  rWpnS+Wrs+k
  Aradu.FTT59 251 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDAARWPNSHWRSVK 334
                  79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.05E-46112254IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-40118240IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-20126215No hitNo description
SMARTSM010191.0E-21127227IPR003340B3 DNA binding domain
PfamPF023623.4E-21127226IPR003340B3 DNA binding domain
PROSITE profilePS5086312.167127227IPR003340B3 DNA binding domain
PfamPF065073.7E-34251334IPR010525Auxin response factor
SuperFamilySSF542772.75E-7716798No hitNo description
PfamPF023094.2E-7720808IPR033389AUX/IAA domain
PROSITE profilePS5174522.854723807IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MRLSSAGFSP PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE  60
VDAHIPNYPS LPPQLICQLH NLTMHADAET DEVYAQMTLQ PLNPQEQKEA YLPAELGSPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR  180
HIFRGQPKRH LLTTGWSVFV GAKRLVAGDS VLFIWQNQLL LGIRRANRPQ TVMPSSVLSS  240
DSMHLGLLAA AAHAAATNSR FTIFYNPRAS PSEFVIPLAK YVKAVYHTRV SVGMRFRMLF  300
ETEESSVRRY MGTITGISDL DAARWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTF  360
PMYPSPFPLR LKRPWPPGLP SFHGLKDEDF GMSSPLMWLR DADRGGLQSL NFQGIGVSPW  420
MQPRFDPSML NMQTDMYQAV AAAALQDPSK QHPSSLLQFQ QPQNFPNRTA ALMHSQILQQ  480
SPPQQAFQID QENQSQTPTH VQLRPQHQNS FNNQLHHYNN QQQQQQPQQI SNAVSTMSQF  540
VSSSATQPLS PPVQAISSLC QQQSFSDSNG NPVTTANVSP LHSILGSFPQ DEASQLLNLP  600
RSSSWIPVQT SSAAWPSKRV AVDPLLSSGA SQCILPQVEL QSSISQNAVT LPPFPGRECS  660
IDQEGSTDPH NHLLFGVNIE PSTLLVHSHG DSPTIPFQTS NYMSTAGADS SGFLHPSENM  720
PNKTFVKVYK SGSFGRSLDI TKFSSYHELR SELARMFGLE GELEDPLRSG WQLVFVDREN  780
DVLLLGDGPW PEFVNSVWCI KILSPQEVQQ MGNSGLELLN SVPVQRLSNS ICDDYGSRDS  840
RSLSTGITTV GSLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1581335543388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.FTT59
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015942865.10.0auxin response factor 6 isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A445BCB00.0A0A445BCB0_ARAHY; Auxin response factor
STRINGAES641200.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]