PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.FPS72

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 494aa MW: 56188.8 Da PI: 8.9526

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.FPS72	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56	1.3e-17	50	136	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ +++ +ei+++ +Cs+egk +++ + +++t+++ ++C a++ ++ k g w ++k++l+H+H+++p Aradu.FPS72 50 KFYRNYAKAAGFSTRVRCINRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGVNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 136 6**************98887..8889*********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-15	50	136	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.976	282	318	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.4E-4	291	315	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0024	293	320	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MDHSTSDCQL NPGEVDYEFK SNEVPEPLTV DDELVPKVGM TFTTLEDAGK FYRNYAKAAG 60 FSTRVRCINR KGNEIKNQLI TCSREGKWKS KISPTEKTNP TAGVNCPARI YIHTLKDVGA 120 WIISKVVLDH SHPCCPSKAE MLKQHRELSM SICRTIENND EADHHFWAGM RSTQRSERMH 180 SFFNKYITRN SLLIQFVKQY DNCLGSREQA ERKSDAANFH TIIPCVTKSS IEAQFQDAYT 240 HAKFREVQAG KANCITRLKN SALGYSVYEV VEQVSSSIFN KFAVTYDSVA AEVKCQCLLF 300 ESRRILCRHA LSVLSFEQVS QVSPRYILER WSKKSSHDEP LMEPRSKRFD QLIFRSQNIC 360 EFASESEELT AILHRAYDNT MAEMEALKAK RKGTSSLSHK DANLESVNEL QSPPRIRTRG 420 RPKNRLGSKL EKQIANATKK KKTKVLSELM RECYIQINLF DAASAAHSNC SQYQGHVINY 480 QFRVPAAGDH SLGV

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MDHSTSDCQL NPGEVDYEFK SNEVPEPLTV DDELVPKVGM TFTTLEDAGK FYRNYAKAAG  60
FSTRVRCINR KGNEIKNQLI TCSREGKWKS KISPTEKTNP TAGVNCPARI YIHTLKDVGA  120
WIISKVVLDH SHPCCPSKAE MLKQHRELSM SICRTIENND EADHHFWAGM RSTQRSERMH  180
SFFNKYITRN SLLIQFVKQY DNCLGSREQA ERKSDAANFH TIIPCVTKSS IEAQFQDAYT  240
HAKFREVQAG KANCITRLKN SALGYSVYEV VEQVSSSIFN KFAVTYDSVA AEVKCQCLLF  300
ESRRILCRHA LSVLSFEQVS QVSPRYILER WSKKSSHDEP LMEPRSKRFD QLIFRSQNIC  360
EFASESEELT AILHRAYDNT MAEMEALKAK RKGTSSLSHK DANLESVNEL QSPPRIRTRG  420
RPKNRLGSKL EKQIANATKK KKTKVLSELM RECYIQINLF DAASAAHSNC SQYQGHVINY  480
QFRVPAAGDH SLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.FPS72

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445A1M9	0.0	A0A445A1M9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-22	far-red elongated hypocotyls 3