PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.FNR52 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ARF | ||||||||
Protein Properties | Length: 1650aa MW: 183321 Da PI: 6.3811 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.7 | 2.2e-23 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ + Aradu.FNR52 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytQQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 222 99*****************************96555555..8************************************************..889999 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++++r+ Aradu.FNR52 223 LLLGIRRA 230 9****997 PP | |||||||
2 | Auxin_resp | 118.5 | 5.4e-39 | 255 | 338 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv+++ k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k Aradu.FNR52 255 AAHAAATNSRFTIFYNPRASPSEFVIPLTKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 338 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.18E-48 | 114 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.6E-42 | 122 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.71E-21 | 128 | 229 | No hit | No description |
PROSITE profile | PS50863 | 12.52 | 129 | 231 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-24 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-21 | 129 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.6E-34 | 255 | 338 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.9E-6 | 753 | 845 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 6.47E-8 | 754 | 841 | No hit | No description |
PROSITE profile | PS51745 | 23.937 | 763 | 847 | IPR000270 | PB1 domain |
PROSITE profile | PS51375 | 8.024 | 1008 | 1042 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.047 | 1011 | 1040 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 9.4E-4 | 1011 | 1041 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 5.842 | 1043 | 1078 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 8.133 | 1079 | 1113 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 10.622 | 1114 | 1148 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.012 | 1117 | 1146 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 4.3E-7 | 1117 | 1150 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 6.8E-12 | 1148 | 1197 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 11.257 | 1149 | 1183 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 1.1E-6 | 1152 | 1185 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 11.082 | 1184 | 1218 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 3.5E-6 | 1187 | 1220 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF12854 | 5.8E-8 | 1214 | 1245 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 9.339 | 1219 | 1249 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 0.0016 | 1222 | 1245 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 12.299 | 1250 | 1285 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 2.2E-4 | 1252 | 1274 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 7.4E-7 | 1253 | 1286 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 13.592 | 1286 | 1320 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 3.9E-16 | 1288 | 1334 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 4.1E-9 | 1288 | 1320 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 11.816 | 1321 | 1355 | IPR002885 | Pentatricopeptide repeat |
SuperFamily | SSF48452 | 8.72E-6 | 1322 | 1556 | IPR011990 | Tetratricopeptide-like helical domain |
TIGRFAMs | TIGR00756 | 5.4E-9 | 1323 | 1356 | IPR002885 | Pentatricopeptide repeat |
Gene3D | G3DSA:1.25.40.10 | 9.0E-8 | 1325 | 1561 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS51375 | 14.447 | 1356 | 1390 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 1.3E-18 | 1356 | 1404 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 4.5E-12 | 1360 | 1392 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 11.093 | 1391 | 1425 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 2.0E-5 | 1393 | 1426 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 5.3E-17 | 1426 | 1473 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 12.167 | 1426 | 1460 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 3.7E-8 | 1428 | 1461 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 12.288 | 1461 | 1495 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 5.1E-7 | 1463 | 1497 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF12854 | 6.3E-11 | 1491 | 1523 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 12.682 | 1496 | 1530 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 8.7E-9 | 1499 | 1532 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 1.9E-16 | 1530 | 1578 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 13.998 | 1531 | 1565 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 6.4E-10 | 1533 | 1567 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 10.084 | 1566 | 1600 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 8.4E-4 | 1568 | 1602 | IPR002885 | Pentatricopeptide repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0032543 | Biological Process | mitochondrial translation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1650 aa Download sequence Send to blast |
MKLSSSGFNQ PAEEEGEKKT LNSELWHACA GPLVSLPPVG SRVVYFPQGH SEQVAASTNR 60 EADAHIPNYP NLPPQLICQL HNVTMHADAE TDEVYAQMTL QPLSPQEQKD VYLLPAELGT 120 PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY TQQPPAQELI ARDLHDNEWK 180 FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTVMPSS 240 VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLTKYVKAVY HTRVSVGMRF 300 RMLFETEESS VRRYMGTITG ISDLDSVRWP NSHWRSVKVG WDESTAGDRQ PRVSLWEIEP 360 LTTFPMYPSP FPLRLRRPWP SGLPSLYGLK DGGDMGINSP FMWLQSGLGD QGMQSLNFQG 420 LGVTPWLQPR FDASMPGLQP ELYQAMTSAA FQEMRTMDPS KPSSQSLLQF QQPSNVPSAF 480 ASELQRQVLP QSQPQNTLLQ NFQEHQTPAP SQISPQQLLR YHPYSDQRQQ QQQLKTVPVQ 540 QQLQNLVSPL SNFAAATQPQ SPSLQALASH CQQQSFPEPI RNHVSSSDVS PMQSLLGSFS 600 QDGASQLLNR NGPNSVLSSG ALLPKQITVE SQVPSAGAQC VLPQVENLGT SQSNVSELTA 660 LPPFPGREHS AYQGAADPHS NLLFGINIDP SSLMLQNGMQ NLRNLGNVND SLSMTFSAPN 720 CGGANAPGSD FPLSSNVTTS SCVDESGFLQ SSENVDQSNT PTRTFVKVHK SRSLGRSLDI 780 SKFSSYDELR SELARLFGLE GQLEDPQRSG WQLVFVDREN DILLLGDDPW QEFVNSVWSI 840 KILSPLEVQQ MGKGVVPSTS APSAQKLSST ATTNSCDNNY GVGKQELRSS SNGMASMGSA 900 SRKEPLDRIH LEGTILFSVK IASFPLCTTT TTTTLGAKKD QFWDSAEEES SDNEWERLLK 960 PFGLKQLRSS LSPISPSQLC KLLLLPLDIP TTMELFEKAG SQNGYSHSFD VYCILIDKLG 1020 SNGDFKTIDL LLKQMKEEGI VFKESIFIMI MRYYGKAGLP GQATRLLLDM WGVYDCEPSF 1080 KSYNVVLEIL VAGNCPKVAP NVFYDMLNRG VSPTVSTFGV VMKALCMINE VDSACSLLKD 1140 MMKHGCVPNS IIYQTLIHTL SQNNRVNDAM KLLEEMFLMG CEPDVQTFND VIYGLCRASR 1200 IHEAAKLLDR MLLRGFSADE MTYGFLINGL CRTGHVDEAR ALLNKIPNLN AVHYNTLING 1260 YVARGRFDEA KDLLYNNMVI SGYKPDGFTF NIMIDGFCKK GRLVSALEFL HEMVTKGFEP 1320 CVVTYTILIN GFCKQGRLDE AAEVVNAMWA KGLSLNTVGY NCLISALCKD GRTEEALQLF 1380 GEMSSKGCKP DIYTFNSLIF GMCNDDNMEE ALRLYRDMFM EGVIANTVTY NTLIHAFIRR 1440 GSIQQAFKLV DEMIFRGCPL DNITYMTLIK ALCMAGAVEK GLALFEEMLG KGIFPDTNCC 1500 NILINAFCRI GKVNDALQFL REMIHRGLIP DIVTYNCLIN GLCKMGHLQE ALNLFNRLQA 1560 EGMRPDAITY NTLVSRYCYE GLFNEACLMM YKGVDNGFVP NEITWYILLN YFARVLRGVG 1620 PSSRYTDVRI QIFFLGLFGA DRCPQGATCD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-158 | 17 | 359 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.FNR52 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015973235.1 | 0.0 | auxin response factor 6 isoform X1 | ||||
Swissprot | Q653U3 | 0.0 | ARFQ_ORYSJ; Auxin response factor 17 | ||||
TrEMBL | A0A445C411 | 0.0 | A0A445C411_ARAHY; Auxin response factor | ||||
STRING | XP_007141460.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1765 | 34 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.2 | 0.0 | auxin response factor 8 |
Publications ? help Back to Top | |||
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