PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.FD8M7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 92aa MW: 10820.2 Da PI: 4.81 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.4 | 1.9e-11 | 3 | 76 | 17 | 98 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 lp+kf +++g+ + + l+ + +W++ ++k+g++ ++kGW+eF+ L+ g vF g + + v++f+ Aradu.FD8M7 3 KLPNKFSKKYGNG--FPNPVYLKPADDTEWKIVW--TNKDGEIQFEKGWREFAAYYSLENGHLYVFN--G--TSKIEVQIFD 76 59********766..4556***************..*******************************..4..3345788876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.646 | 1 | 78 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-13 | 3 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-12 | 3 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.12E-8 | 4 | 76 | No hit | No description |
Pfam | PF02362 | 2.8E-8 | 4 | 76 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MQKLPNKFSK KYGNGFPNPV YLKPADDTEW KIVWTNKDGE IQFEKGWREF AAYYSLENGH 60 LYVFNGTSKI EVQIFDMSCL EIEYPSKDLI ND |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.FD8M7 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020969385.1 | 4e-53 | B3 domain-containing transcription factor VRN1-like isoform X3 | ||||
Refseq | XP_020989110.1 | 5e-53 | B3 domain-containing protein LOC_Os12g40080 | ||||
Refseq | XP_025624981.1 | 5e-53 | B3 domain-containing protein LOC_Os12g40080 isoform X1 | ||||
TrEMBL | A0A445B0R6 | 5e-52 | A0A445B0R6_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA09G20150.1 | 5e-30 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 2e-12 | B3 family protein |