PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.F6LF0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | WOX | ||||||||
Protein Properties | Length: 209aa MW: 23795 Da PI: 5.6692 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.3 | 4.2e-21 | 81 | 141 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +p++++++e++ +l +++e++V++WFqNrRa+ k+ Aradu.F6LF0 81 RQRWTPTPLQLQILERIFDEgNGTPNKQKIKEITLELgqhgQISETNVYNWFQNRRARSKR 141 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 100.8 | 9.7e-33 | 80 | 143 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tPnk++i++it eL ++G+i+++NV++WFQNr+aR+++kq Aradu.F6LF0 80 ARQRWTPTPLQLQILERIFDEGNGTPNKQKIKEITLELGQHGQISETNVYNWFQNRRARSKRKQ 143 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-17 | 77 | 144 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.787 | 77 | 142 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.1E-14 | 79 | 146 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.84E-18 | 80 | 143 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.5E-19 | 81 | 141 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.64E-15 | 81 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MEAEQATSGA NNGIGSLYMK VMTDEQLEML RQQISVYATI CDRLVEMHKS ITTQQDLAGM 60 RLGNLYCDPL MACSGHKITA RQRWTPTPLQ LQILERIFDE GNGTPNKQKI KEITLELGQH 120 GQISETNVYN WFQNRRARSK RKQLLPSQNN LEAEADVEVE SPKEKKMPEI QETIHQVPSY 180 ENLSHSPDIG FEQLMSKLET GGCYGSYFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 142 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.F6LF0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM502261 | 0.0 | KM502261.1 Arachis hypogaea wuschel-related homeobox 13B2 (WOX13B2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015934106.1 | 1e-157 | WUSCHEL-related homeobox 8 | ||||
Refseq | XP_016167316.1 | 1e-157 | WUSCHEL-related homeobox 8 | ||||
Refseq | XP_025612418.1 | 1e-157 | WUSCHEL-related homeobox 8 | ||||
Refseq | XP_025666212.1 | 1e-157 | WUSCHEL-related homeobox 8 | ||||
Swissprot | Q5QMM3 | 2e-77 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A0H3Y991 | 1e-156 | A0A0H3Y991_ARAHY; Wuschel-related homeobox 13B1 | ||||
STRING | XP_007136031.1 | 1e-115 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 4e-72 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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