PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.F6G0K
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 287aa    MW: 33369.9 Da    PI: 6.4158
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.F6G0KgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-16175264189
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                  f+ v+  s+ +  +++ +p +fa+e+++  e++    l+  +gr+W+v ++ + ++g+    + l+kGW +F + n+L+  D++vF+l+++  +
  Aradu.F6G0K 175 FEVVMQDSYINGGRCMAVPSNFAREYMK--EGG--YLLRVADGRTWKVMYKTWSGDGMpckkCKLQKGWAKFSQGNKLEKDDVCVFELVNNnCN 264
                  677787888888889***********84..466..6666777********999998888889*************************9987444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.41E-1210108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.71114109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-1114108IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-814107No hitNo description
SMARTSM010190.04615109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-19169280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-19170263IPR015300DNA-binding pseudobarrel domain
CDDcd100175.37E-18173280No hitNo description
PfamPF023625.1E-15175264IPR003340B3 DNA binding domain
PROSITE profilePS5086311.166175275IPR003340B3 DNA binding domain
SMARTSM010195.0E-4175270IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAIHQQREHT SVVSFFKIIC RWHILDEKIK LPTEFTNKCG LKLPNPVILK VVDGNQKKVH  60
WTKINGSIWF IGKEWKEFLE NYSVSHGHLL LFKYCLVASC FGVQIFDSTT LEIDYPYHEL  120
NYDDYEDYYE DDDDEDVVDV VKLQYDQYQL KDKSESIADA IRSDRLERKD SNPSFEVVMQ  180
DSYINGGRCM AVPSNFAREY MKEGGYLLRV ADGRTWKVMY KTWSGDGMPC KKCKLQKGWA  240
KFSQGNKLEK DDVCVFELVN NNCNGSCSTI IPTFNVLIHR NHIGSSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.F6G0K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015965533.10.0B3 domain-containing transcription factor VRN1-like
RefseqXP_025697530.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A444Z4V10.0A0A444Z4V1_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1909224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.18e-16B3 family protein