PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.F2DT2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 360aa MW: 41040.7 Da PI: 6.3189 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.3 | 2.2e-51 | 18 | 144 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 ppGfrFhP+deel+v+yL++++++++l++ ++i+e+d+yk++PwdLpkk+ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++l++ +++ Aradu.F2DT2 18 PPGFRFHPSDEELIVHYLQNRISSRPLPA-SIIAEIDLYKYNPWDLPKKALFGEEEWYFFSPRDRKYPNGLRPNRAAGSGYWKATGTDKPILTSyGSK 114 9****************************.89***************8888899**************************************998899 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +g+kk Lvfy gr pkg+ktdW+m+eyrl Aradu.F2DT2 115 RIGVKKALVFYLGRPPKGTKTDWIMNEYRL 144 9***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-63 | 11 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.017 | 17 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-26 | 18 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MEEGGGDQHA SNSSYTFPPG FRFHPSDEEL IVHYLQNRIS SRPLPASIIA EIDLYKYNPW 60 DLPKKALFGE EEWYFFSPRD RKYPNGLRPN RAAGSGYWKA TGTDKPILTS YGSKRIGVKK 120 ALVFYLGRPP KGTKTDWIMN EYRLVDTITS PSRLKGSMRL DDWVLCRVRH KGYSSKNSCE 180 NQDNPCEPNM LSNLPRCDEG YPATNMNFHA DMITDYQYKD YQILASILVG GHVPTTESMS 240 SLNLKDGKGN DPITSVHEDG FHREDSSTTV SPLDCYFNSL KRKSNEDSQY ENLISFNRKL 300 NMETTMDDES SIINGGLNFY NQNQSQDDII FNKRAAEPSI NFQELKQSAF IGRYPQCSSD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-71 | 13 | 177 | 13 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-71 | 13 | 177 | 13 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-71 | 13 | 177 | 13 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-71 | 13 | 177 | 13 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-71 | 13 | 177 | 13 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-71 | 13 | 177 | 13 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.F2DT2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC150891 | 8e-38 | AC150891.3 Medicago truncatula chromosome 2 clone mth2-76a9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015935729.1 | 0.0 | NAC transcription factor 32-like | ||||
Refseq | XP_025614024.1 | 0.0 | NAC transcription factor 32 | ||||
TrEMBL | A0A445BW98 | 0.0 | A0A445BW98_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA13G40251.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2416 | 29 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 2e-80 | NAC domain containing protein 25 |