PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.F0544
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 686aa    MW: 76305.1 Da    PI: 7.0705
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.F0544genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.6e-23137238199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f k+lt+sd++++g +++pk++a e+       +k++  ++l+ +d++g  W++++i+r++++r +lt+GW+ F ++++L +gD+++F   + +++el
  Aradu.F0544 137 FSKILTSSDSGAHGGFSIPKRHAYECfppldmTLKPPA-QELVARDLHGYDWRFRHIFRGQPRRNLLTSGWSTFLNSKKLAAGDTCIFF--RGENGEL 231
                  889****************************8555554.59************************************************..449999* PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++v+r+
  Aradu.F0544 232 RIGVRRA 238
                  ****996 PP
2Auxin_resp81.51.9e-27265346183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a++a++t+s+F+v+++Pr+ + eF++++++++k+++++++ GmR+++ ++ e+ +++r++Gtv++++d+d +rWp+S+WrsLk
  Aradu.F0544 265 ASNAVATGSMFTVYHYPRTNPFEFIIPLQRYMKSTQMSYATGMRVQLLLDVEE-PRKRYAGTVISMEDFDGIRWPGSEWRSLK 346
                  6799***********************************************98.66778**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-35125261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-34130246IPR015300DNA-binding pseudobarrel domain
CDDcd100175.73E-19136237No hitNo description
PfamPF023627.8E-21137238IPR003340B3 DNA binding domain
SMARTSM010193.1E-20137239IPR003340B3 DNA binding domain
PROSITE profilePS5086312.915137239IPR003340B3 DNA binding domain
PfamPF065071.1E-25265346IPR010525Auxin response factor
PfamPF023096.7E-7584672IPR033389AUX/IAA domain
PROSITE profilePS5174517.761587669IPR000270PB1 domain
SuperFamilySSF542778.04E-7589663No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MDADGVTASS SPNAADEGVN NYKKDGDELY ERVWRACAGE CVYIPRVGDK VLYFPQGYLE  60
QVASFTQHQQ DGHVDIPVHN LPSKILCRVV SVQLKTEASR DEVFAQVTLL PESKQDELSS  120
KDTDTAQIPS RSSVYSFSKI LTSSDSGAHG GFSIPKRHAY ECFPPLDMTL KPPAQELVAR  180
DLHGYDWRFR HIFRGQPRRN LLTSGWSTFL NSKKLAAGDT CIFFRGENGE LRIGVRRAMK  240
RQNIASPSAS LISAHSMQLG ILASASNAVA TGSMFTVYHY PRTNPFEFII PLQRYMKSTQ  300
MSYATGMRVQ LLLDVEEPRK RYAGTVISME DFDGIRWPGS EWRSLKVQWD ATPHADMHPE  360
RVCPWWIEAL DCAKQKHIPI LPAPKKARPN NLPLPELSGF VKDEIIRYSS KPTAQRLERD  420
LQGQDYNDVA SPQPVLKQPS SKVICNSNLG IENQLRIPIQ DPVHQCTGSS MSFPHEDLST  480
SSSNAYCPGS ESQGWPSSES KDENDVPFGP HSSCTTYKLF GIYLTDCQSE LPSPQFSAYS  540
KIPSTISIPP MSHSSIYATI QAAKQCGNIQ GVSSEKRCKK CRSDNSRSCT KVLKQGTALG  600
RAIDLTRFAG YDELISELDW MFDFGGGLIN GSSGWHVTCI DEDGDILLLG DFPWQDFRSM  660
VQKMIIRPKD AINNPSPSSS AYPASI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1202737517360Auxin response factor 1
4ldw_A1e-1202737517360Auxin response factor 1
4ldw_B1e-1202737517360Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.F0544
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015968922.10.0auxin response factor 4
TrEMBLA0A445CM960.0A0A445CM96_ARAHY; Auxin response factor
STRINGGLYMA19G39340.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131052329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-137auxin response factor 2