PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.EV6XS
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 556aa    MW: 63778 Da    PI: 9.5093
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.EV6XSgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.61.7e-1799185191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++   +ei+++  +Cs+egk +++ +    +++ +++   +C a++ ++  k  g w ++k++l+H+H+++p
  Aradu.EV6XS  99 KFYRNYAKVTGFSIRVQSTNRK--GNEIKNQLITCSREGKWKSKISP---TEKMNPTVGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 185
                  6****************98887..8889*************999877...8899999***********998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.8E-1599185IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.926332364IPR007527Zinc finger, SWIM-type
PfamPF044342.6E-4338361IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4339366IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
FFFFFLFFSL LTPASFSIDF CLLKSKFGFI LKIMVDSTSD SQLNQGEVDY EFESNKVPET  60
LGCRSELSLG VFVSPLSVVD DQFIPKVGMT FTTLEDAGKF YRNYAKVTGF SIRVQSTNRK  120
GNEIKNQLIT CSREGKWKSK ISPTEKMNPT VGLNCPARIY IHTLKDVGAW IISKVVLDHS  180
HPCCPSKAEM LKQHRELSMS IHRIIENNEE ASIRPSKIYQ SFVAATDRHI WVPIYLDHHF  240
CAGMRSTQRS ESMHLFFNKF ITRNSSLIQF VKQYDNCLGS REQAERESDA ADFHTVIPCA  300
TKSSIEAQFQ DVYTHQKFRE YKKLENKFPT QYSTIAAEVK CQCLLFESRG ILCRHALSVL  360
SFEQVSQVSS RYILERWSKK VKRRHTHIKS SHDEPLMEPR SKRFDQLVFH SQNICEFASE  420
SEELTAFLHR AYDNVMAEME SLKAKRKGTS SLSHEDANLE SVNELQSPPR IRTRGRPKNR  480
LGSKLDKQIA NATKKKKMKV LSEINLIDAA SVVHSNNIQY QGHGFSLKAS WGDRFQGVYS  540
TLFGFKKSQV MGVYLI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.EV6XS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.11e-178protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445AF030.0A0A445AF03_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-26far-red elongated hypocotyls 3