PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.EGK1M | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 122aa MW: 14032.8 Da PI: 9.7085 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 102.9 | 1.1e-32 | 1 | 51 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk nrqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss Aradu.EGK1M 1 KRIENKVNRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSS 51 79***********************************************96 PP | |||||||
2 | K-box | 67.3 | 5.2e-23 | 57 | 122 | 5 | 70 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 +++++ ++++++ +q++ Lk+ +e Lq++qR+llGedL++++ eLqqLe+qLe++l++iRs+Kn Aradu.EGK1M 57 QTTQVRNHDTQNTYQDYVTLKAYVELLQSSQRNLLGEDLTKMTSTELQQLENQLESALTNIRSTKN 122 5566889999******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00265 | 9.94E-36 | 1 | 53 | No hit | No description |
SuperFamily | SSF55455 | 2.49E-28 | 1 | 70 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.4E-32 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.604 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.4E-28 | 2 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-20 | 15 | 30 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-20 | 30 | 51 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.7E-18 | 63 | 122 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.62 | 66 | 122 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
KRIENKVNRQ VTFSKRRNGL LKKAYELSVL CDAEVALIIF SNRGKLYEFS SSSSLPQTTQ 60 VRNHDTQNTY QDYVTLKAYV ELLQSSQRNL LGEDLTKMTS TELQQLENQL ESALTNIRST 120 KN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 2e-17 | 2 | 52 | 9 | 59 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 2e-17 | 2 | 52 | 9 | 59 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 2e-17 | 2 | 52 | 9 | 59 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 2e-17 | 2 | 52 | 9 | 59 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
3mu6_A | 2e-17 | 2 | 52 | 9 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_B | 2e-17 | 2 | 52 | 9 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_C | 2e-17 | 2 | 52 | 9 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_D | 2e-17 | 2 | 52 | 9 | 59 | Myocyte-specific enhancer factor 2A |
6byy_A | 3e-17 | 2 | 52 | 10 | 60 | MEF2 CHIMERA |
6byy_B | 3e-17 | 2 | 52 | 10 | 60 | MEF2 CHIMERA |
6byy_C | 3e-17 | 2 | 52 | 10 | 60 | MEF2 CHIMERA |
6byy_D | 3e-17 | 2 | 52 | 10 | 60 | MEF2 CHIMERA |
6bz1_A | 3e-17 | 2 | 52 | 10 | 60 | MEF2 CHIMERA |
6bz1_B | 3e-17 | 2 | 52 | 10 | 60 | MEF2 CHIMERA |
6bz1_C | 3e-17 | 2 | 52 | 10 | 60 | MEF2 CHIMERA |
6bz1_D | 3e-17 | 2 | 52 | 10 | 60 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.EGK1M |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY947464 | 7e-48 | AY947464.1 Prunus dulcis MADS-box transcription factor (MADS3) mRNA, complete cds. | |||
GenBank | EF440352 | 7e-48 | EF440352.1 Prunus persica transcription factor MADS7 (MADS7) mRNA, complete cds. | |||
GenBank | JQ686725 | 7e-48 | JQ686725.1 Prunus avium transcription factor MADS4 (MADS4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015945801.1 | 6e-77 | truncated transcription factor CAULIFLOWER A | ||||
Swissprot | Q7Y040 | 3e-53 | EJ2_SOLLC; MADS-box protein EJ2 | ||||
TrEMBL | A0A445KHZ3 | 1e-53 | A0A445KHZ3_GLYSO; MADS-box protein EJ2 | ||||
TrEMBL | K7KNE2 | 1e-53 | K7KNE2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G07286.1 | 2e-54 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.3 | 2e-52 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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