PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.ED224
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HB-PHD
Protein Properties Length: 705aa    MW: 80186.4 Da    PI: 9.8123
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.ED224genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.4e-09499544954
                  HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  +e +e L ++F++n  p ++++  L+k+lgL+ ++V+ WF+N R+ 
  Aradu.ED224 499 REAVEKLRQVFAENELPPRSTKLALSKELGLDIEKVSKWFKNARYS 544
                  68899***************************************85 PP
2PHD33.59.3e-12235289150
                  SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
          PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 
                  +C+ C+   +  +++++ Cd +C+++fH kCl++ l++e++p g   wlC+ C +
  Aradu.ED224 235 YCQKCNLreALRDKDIIRCDgTCNRTFHKKCLDPALDTENIPPGehGWLCKFCGC 289
                  799999954455********56********************9999*******76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.108.6E-10226291IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579033.29E-11227292IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS5001610.22233290IPR019787Zinc finger, PHD-finger
SMARTSM002493.1E-6235288IPR001965Zinc finger, PHD-type
CDDcd155047.93E-22235287No hitNo description
PfamPF006289.1E-9235289IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590236287IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.607.5E-12477542IPR009057Homeodomain-like
PROSITE profilePS5007111.904488548IPR001356Homeobox domain
SMARTSM003893.7E-8488552IPR001356Homeobox domain
SuperFamilySSF466891.71E-10491553IPR009057Homeodomain-like
CDDcd000863.39E-7491552No hitNo description
PfamPF000463.9E-7499544IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MRDGKKSNNR GLQKSIHPKA KTESKLNSSL RVKSKSTKCQ GKKHKLKPKS HTQRNASNMS  60
RKRATDPSIK GPNKEPSKKK LIIRFSLHET DDKSSKKLSS KLKGEKVSFR SKKEGKDVDG  120
KVKLQNRKRK RKKKRQRNNA DIDDASRLKS RTRYLLIKMK LEQNLIDAYS GEGWKGQSRE  180
KIRPEKELQR ARKQILKCKL SIRDAIHQLD SLSSLNSSKD SVIVPDGSNC HEHKYCQKCN  240
LREALRDKDI IRCDGTCNRT FHKKCLDPAL DTENIPPGEH GWLCKFCGCK MEILGAMNAH  300
LGTHFSLHST WQDVFKEEAA KPDGDTALLN PEEEWPSDDS EDDDYDPERR EVCHNINTEG  360
SNDDASNNLS SSTSLCSSDG ECSLVDEGFN HEYSSLDGCI DSNESEENVC GPRQRKTVDY  420
KQLYDEMFGK DAAACEQVSE DEDWGPTKRK RRDKESDAVD TLMTLHECQN RIHNSENINM  480
EREGSPSKQI KRSCFRIPRE AVEKLRQVFA ENELPPRSTK LALSKELGLD IEKVSKWFKN  540
ARYSALKSRK QHTEGADLPQ TSGSKDNRLQ DSERAEVSKP KASENIINHS LKNGKAVSGR  600
KKRRSEVSPT QREKGDKELE ELSDDVCLMK LLKNKKKRLN SAFEGHSHTA ELEFEKLSKV  660
KAKLDNLRQK LTAILNYRAN ASNASHSNEP SIMYVPTAVL REKVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125132NRKRKRKK
2126131RKRKRK
3126133RKRKRKKK
4126134RKRKRKKKR
5128132RKRKK
6128134RKRKKKR
7131136KKKRQR
8448453RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.ED224
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015972994.10.0pathogenesis-related homeodomain protein isoform X2
RefseqXP_025606746.10.0pathogenesis-related homeodomain protein
SwissprotP487851e-141PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A445ENP80.0A0A445ENP8_ARAHY; Uncharacterized protein
STRINGXP_004487993.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-134pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]