PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.EAF6N
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 619aa    MW: 70854.6 Da    PI: 7.7671
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.EAF6NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.63.2e-2174165191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  +fYn+Y+   GF +rk+   +  ++g+i++r++vC+keg r+ +  + ++++r+ r+ trt+C a+l+vk+++  g+w+v+ +++ HnH+l+p
  Aradu.EAF6N  74 QFYNAYSCWHGFVMRKDDVVRD-NQGRIISRQLVCNKEGWRNMRYLDmDDRSREARSLTRTKCPARLRVKLDYgCGRWKVSCFVESHNHDLTP 165
                  6****************99998.8888***************9998867889999******************99***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-1974165IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.052283319IPR007527Zinc finger, SWIM-type
SMARTSM005752.2E-5294321IPR006564Zinc finger, PMZ-type
Gene3DG3DSA:4.10.60.101.4E-4360368IPR001878Zinc finger, CCHC-type
SuperFamilySSF577569.68E-5421453IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.101.4E-4430450IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MSINEDDVKN DSDNDLGDDF DYQPNAEDNA EDDDVDSLDS TSKSEEVCGV KRIADLMVED  60
IWNLEFRTED EACQFYNAYS CWHGFVMRKD DVVRDNQGRI ISRQLVCNKE GWRNMRYLDM  120
DDRSREARSL TRTKCPARLR VKLDYGCGRW KVSCFVESHN HDLTPPQFVH LVPANRRLTV  180
SDRVQVENLH NFGVKSCHIM GALKEYRNNE LIADFKSQCS EPVMITSLEV YERSASCYFT  240
QNIFKEIRNE IQRAGALNIT VLSTTLDKVE FSVTALGDPA KDRRVEVDRG KNLFSCSCKL  300
FESRGIPCSH IFCAMKFENI LEFPELLIYK RWTKNAKNEF ISTDMPVNDD IERVLKFQVG  360
ALASNCNKLC DIACKDLADF DEVQSELVNL VIRLQSRKQG KSTPNVNVEG INDPFVVKSK  420
GAPSKRSSWR KKRACSNCHK YDHYYKRCPD LMQHSVEGSP RDRSYGNASA KDSGFSPQRF  480
ANSSRSFSIK SEHHSGPNTK PFKKGGTRKF TATGMRNRKR KDNTFVERSL HESSESIDIA  540
STNGVFNKNL YSLTQQVKES QQDKRHSFKN YDCVNDVVDD KCDTRHVQID VRDPLTSSLA  600
CGNKQGSYMA LFASMHRTL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.EAF6N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371770.0HQ637177.1 Arachis hypogaea clone AHF-303L13 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015960065.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445D3M70.0A0A445D3M7_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF845424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-22FAR1-related sequence 5