PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.E8TZV
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TALE
Protein Properties Length: 290aa    MW: 33391.7 Da    PI: 9.8792
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.E8TZVgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox314.5e-102332672155
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  k +yp+++++ eLAk++gL+++q+ +WF N+R ++
  Aradu.E8TZV 233 KWPYPTEADKIELAKSTGLDQKQINNWFINQRKRH 267
                  579*****************************885 PP
2ELK32.12.6e-11187208122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK++LlrK+++++g+Lk EFs
  Aradu.E8TZV 187 ELKDRLLRKFGSHIGTLKLEFS 208
                  9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.3E-82870IPR005540KNOX1
PfamPF037903.3E-133053IPR005540KNOX1
SMARTSM012563.1E-12102148IPR005541KNOX2
PfamPF037916.9E-16110147IPR005541KNOX2
SMARTSM011886.5E-6187208IPR005539ELK domain
PfamPF037893.3E-8187208IPR005539ELK domain
PROSITE profilePS512139.83187207IPR005539ELK domain
PROSITE profilePS5007113.281207270IPR001356Homeobox domain
SuperFamilySSF466895.56E-20208279IPR009057Homeodomain-like
SMARTSM003892.3E-14209274IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-28212271IPR009057Homeodomain-like
CDDcd000867.42E-12219271No hitNo description
PfamPF059203.4E-18227266IPR008422Homeobox KN domain
PROSITE patternPS000270245268IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MLGSDELLSA AGIQQQQPQH NNEAMASTMM KAKIASHPHY PRLLQAYIDC QKVEKTTQPS  60
LSVIQFNFCN RVYNRPNSST ENGRRTSRNR VFVGGNSPRK RPFQERRRRF HETYCELLVK  120
YKSDLARPFD EATSFLNKIE MQLSNLCCNG ASVPTLSDDG AVSSEEDFSA GDGDGGQDGQ  180
SRGEDRELKD RLLRKFGSHI GTLKLEFSKK KKKGKLPKEA RQTLLQWWNV HYKWPYPTEA  240
DKIELAKSTG LDQKQINNWF INQRKRHWKP SENMQFSMME NLGGRFLPDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109ERRRRF
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.E8TZV
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025699509.11e-150homeobox protein knotted-1-like 6 isoform X2
SwissprotQ84JS61e-105KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A445D7T51e-148A0A445D7T5_ARAHY; Uncharacterized protein
STRINGXP_007157365.11e-124(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.13e-92KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]