PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.E0PKG | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 219aa MW: 25769.6 Da PI: 10.1733 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.6 | 1.4e-10 | 5 | 63 | 36 | 98 |
EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++l+ ++g +W++ ++++g++++ kGWkeF+ L+ g ++ F+++g+s+ +v +f+ Aradu.E0PKG 5 VKLQPPDGTEWRIDW--TNRDGEILFDKGWKEFATFYTLENGHVLWFEYNGTSNI--KVNIFD 63 78999**********..*******************************9986555..888886 PP | |||||||
2 | B3 | 43.2 | 7.2e-14 | 140 | 217 | 18 | 99 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 lp f++ + ++++ + + ++W ++iy +++ +++ +W+ Fvk+n+Lk+g +++F+l++r++ el+v+++r+ Aradu.E0PKG 140 LPVCFFRMYFENTK---QYAILRVGKKQWHATMIYYPNRKNALIS-NWRLFVKENNLKAGNVCIFELINRQDPELKVHIRRS 217 67777777755533...356667788*********9998777666.***********************99999*****996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.125 | 1 | 65 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.14E-12 | 3 | 72 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.4E-13 | 3 | 74 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.9E-8 | 5 | 63 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-19 | 116 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.53E-16 | 117 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.1E-6 | 124 | 218 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.74E-11 | 140 | 216 | No hit | No description |
Pfam | PF02362 | 1.2E-11 | 140 | 217 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.292 | 163 | 218 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MPNPVKLQPP DGTEWRIDWT NRDGEILFDK GWKEFATFYT LENGHVLWFE YNGTSNIKVN 60 IFDMTALEID YPSNGRIGDD NSVEILDEPP PRRDRGRPKK KVIAEPKQSL IREAKKFKSK 120 NPSFVIKIKQ KQQTGSPANL PVCFFRMYFE NTKQYAILRV GKKQWHATMI YYPNRKNALI 180 SNWRLFVKEN NLKAGNVCIF ELINRQDPEL KVHIRRSHD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.E0PKG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025624968.2 | 1e-146 | B3 domain-containing transcription factor VRN1-like isoform X2 | ||||
TrEMBL | A0A445B0X9 | 1e-145 | A0A445B0X9_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 1e-15 | B3 family protein |