PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.E0GLY | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 198aa MW: 21862.1 Da PI: 8.6594 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.5 | 6.5e-15 | 80 | 170 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f vl++s+v +s+++ p k + ++ ++ t+ g+sW++ ++ +gr ++ +GW++Fvkan L egD +vF+l+ +s+++ v+ Aradu.E0GLY 80 FHVVLSKSHVRRSCLMG-PSKDLVDIlpfAEV------PTVLKCGGESWDMVYR-GHAPGRKFFDGGWRKFVKANCLVEGDACVFELMANSDEKIVFE 169 56677888888888444.77777677554322......3677889********3.45566799*************************9988877765 PP E CS B3 96 v 96 v Aradu.E0GLY 170 V 170 4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.5E-18 | 75 | 174 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.29E-17 | 75 | 174 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.06E-17 | 78 | 174 | No hit | No description |
PROSITE profile | PS50863 | 11.871 | 79 | 176 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-13 | 80 | 169 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.0E-9 | 80 | 176 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
SLQQHRKHRD VVGGGFRKFW RVLPVDNVTP LPTASSMSSP GSSSTSRVSV EEQAPLPKPA 60 DPAAKLSSDE IAPLSGNPFF HVVLSKSHVR RSCLMGPSKD LVDILPFAEV PTVLKCGGES 120 WDMVYRGHAP GRKFFDGGWR KFVKANCLVE GDACVFELMA NSDEKIVFEV QILRGDVPKV 180 FFKRDRIGES EQKPIVID |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.E0GLY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015949889.1 | 1e-115 | B3 domain-containing protein Os04g0386900 | ||||
Refseq | XP_029148196.1 | 1e-115 | B3 domain-containing protein Os04g0386900 | ||||
TrEMBL | A0A445ECH2 | 1e-113 | A0A445ECH2_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445ED73 | 1e-113 | A0A445ED73_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9722 | 26 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 1e-10 | related to vernalization1 1 |