PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.DXP84 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ARF | ||||||||
Protein Properties | Length: 725aa MW: 79378.5 Da PI: 8.1757 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.7 | 5.4e-24 | 111 | 212 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF + +++ Aradu.DXP84 111 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFL--RAENGD 204 89****************************986445444..8************************************************..448899 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v+++r+ Aradu.DXP84 205 LCVGIRRA 212 9****997 PP | |||||||
2 | Auxin_resp | 116.7 | 1.9e-38 | 284 | 367 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a++ a+++++FevvY+Prast+eF++k++ v++a+++++s GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+ Aradu.DXP84 284 AITLAASNQPFEVVYYPRASTPEFCIKASAVRAAMRIQWSTGMRFKMAFETEDSSRISWfMGTIASVQVVDPIRWPNSPWRLLQ 367 567899****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-38 | 103 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.76E-30 | 104 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.58E-22 | 110 | 211 | No hit | No description |
SMART | SM01019 | 2.4E-23 | 111 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-22 | 111 | 212 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.169 | 111 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.2E-33 | 284 | 367 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 19.098 | 613 | 693 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009743 | Biological Process | response to carbohydrate | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048589 | Biological Process | developmental growth | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 725 aa Download sequence Send to blast |
MKEAEKSLDP QLWHACAGGM VQMPPVNSKV FYFPQGHAEH AQTNVDLAAP LRVPSFILCR 60 VAQVKFLADP ETDEVFTRIS LVPLRNSELD SDDGGVLDAN ALENSEKPAS FAKTLTQSDA 120 NNGGGFSVPR YCAETIFPRL DYSAEPPVQT VIAKDVHGEV WKFRHIYRGT PRRHLLTTGW 180 SSFVNQKKLV AGDSIVFLRA ENGDLCVGIR RAKRGTGGGS EAPSGWSSGN GSCGLGSYGA 240 FSAFLREETK LLRNGCGNSS PGGGGGGGGL SGKAKVSPES VREAITLAAS NQPFEVVYYP 300 RASTPEFCIK ASAVRAAMRI QWSTGMRFKM AFETEDSSRI SWFMGTIASV QVVDPIRWPN 360 SPWRLLQVTW DEPDLLHNVK RVSPWLVELV SSMPAINLSP FSPPRKKLRF PQHPDFPLDV 420 QFPIPSFSGN PLGPHSSPLC CPSDNAPAGI QGARHAQIGI SLSDLYLNNK LQLGVIPAAN 480 VQRLDLHSGF PSGGNFTGHD KSKESLSCLL TMGNSHKKSL EKSDNVKRHQ FLLFGQPILT 540 EQQISRRPSS SGADDDVLPQ NGTKKTSIDE NENKDKEKWF FNDSQSPLSQ QFSPGKSKSS 600 CSTELSWQIG LDTGHCKVFM ESEDVGRTLD LSRLSSYDEL YRRLSNMFGI ERSELLSHVL 660 YRDATGAVKQ TGEEPFSDFM KTAKRLTILT DPSNKDARRA WITGTRNGEH GLDASNKTGP 720 LSIFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 4e-74 | 11 | 392 | 22 | 357 | Auxin response factor 1 |
4ldy_B | 4e-74 | 11 | 392 | 22 | 357 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.DXP84 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015935762.1 | 0.0 | auxin response factor 18 | ||||
Refseq | XP_015935763.1 | 0.0 | auxin response factor 18 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A445BWE8 | 0.0 | A0A445BWE8_ARAHY; Auxin response factor | ||||
STRING | GLYMA12G29720.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF637 | 34 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |
Publications ? help Back to Top | |||
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