PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.DS4J4
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 521aa    MW: 55556.9 Da    PI: 9.0336
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.DS4J4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-05116138123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C++C+k F r  nL+ H r H
  Aradu.DS4J4 116 FICEICNKGFQRDQNLQLHRRGH 138
                  89*******************88 PP
2zf-C2H212.40.00049192214123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H + +
  Aradu.DS4J4 192 WKCEKCNKKYAVQSDWKAHSKIC 214
                  58*****************9876 PP
3zf-C2H211.20.0012222240523
                  TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                  dCg++Fsr++++ +H   +
  Aradu.DS4J4 222 DCGTVFSRRDSFITHRAFC 240
                  9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-5115138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.48E-7115138No hitNo description
SMARTSM003550.022116138IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.845116138IPR007087Zinc finger, C2H2
PfamPF121716.3E-5116138IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
SMARTSM00355120157187IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4180213IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.48E-7187212No hitNo description
SMARTSM00355100192212IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MSNITSCDSG SFSTDNTNSR VEGGGGGDAS LLLLNKNKQQ SESEILGGGG GGNFHSPNSH  60
SSTITTNNSS SNASNANSQP QPPPPPKKKR SLPGNPDPSA EVIALSPNTL VTTNRFICEI  120
CNKGFQRDQN LQLHRRGHNL PWKLKQRSSN EVRKRVYVCP EVSCVHHNPA RALGDLTGIK  180
KHFSRKHGDK KWKCEKCNKK YAVQSDWKAH SKICGTKEYK CDCGTVFSRR DSFITHRAFC  240
DALADENNKV NNEGGVLGHF PKIGSNLLQP LIPNLVASLP ITRNNTSIST SEFKQHPSSF  300
PHELMPISMP EQKPFINTTT TTNNHLINPS SLPSLQLNSP HSPLNMFDES GGVHLAAGLP  360
HMSATALLQK AAQMGATSVS NNNNNTSMAP PSFASSNNGI IMEHFMHNAH PQHDNISPSH  420
QFNNNNNFNG SVGMNGVEMF NAILDQSKAL AKIIDQNNRS SGFSIPPVSG RSSSTINIGG  480
AKGSDDVMTL DFLGIGAGGA GGGGGGGDGG AHGYFGIGPL A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-32188252367Zinc finger protein JACKDAW
5b3h_F2e-32188252367Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.DS4J4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015968597.10.0protein indeterminate-domain 2
TrEMBLA0A445CNH30.0A0A445CNH3_ARAHY; Uncharacterized protein
STRINGXP_007144938.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-97indeterminate(ID)-domain 2