PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.DK681
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 183aa    MW: 20525.2 Da    PI: 5.7386
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.DK681genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.94.9e-10201001197
                  HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  l+ g+l lp kf +++g   +++  + l+ ++g  W++    + ++g + +++GW+eF++   L+ g  + F ++++s+   +v+++
  Aradu.DK681  20 LEDGNLKLPEKFSKKYGDGVPNP--VYLKPPDGTAWKIDW--SLYDGVIQFENGWNEFASYYALDNGNLLAFVYNETSN--IKVHIL 100
                  56788***********5554565..***************..99999999***********************976444..477776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.28E-165101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-1410101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.84210103IPR003340B3 DNA binding domain
CDDcd100174.92E-810101No hitNo description
SMARTSM010192.1E-711103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MASSISSDIR FFKIGLGKSL EDGNLKLPEK FSKKYGDGVP NPVYLKPPDG TAWKIDWSLY  60
DGVIQFENGW NEFASYYALD NGNLLAFVYN ETSNIKVHIL DIIYGLEINY PSLDHIGHDN  120
SIEILNELPP RGWPRKRLKA APEVSSPSTG KILRSSVKTG DVEKGPDKQN WMQCCKNEEA  180
SQS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.DK681
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015946760.11e-133B3 domain-containing transcription factor VRN1
TrEMBLA0A444X9W71e-101A0A444X9W7_ARAHY; Uncharacterized protein
TrEMBLA0A444XA761e-96A0A444XA76_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-15B3 family protein