PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.DH2U1
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YA
Protein Properties Length: 204aa    MW: 22625.9 Da    PI: 7.8426
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.DH2U1genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1025.5e-32109165158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep++VNaKQy++Il+RRq+Rak+e+e+k  +++rkpylheSRh+hAlrR+Rg+gGrF
  Aradu.DH2U1 109 EEPVFVNAKQYHGILRRRQSRAKAESENKA-IRNRKPYLHESRHQHALRRARGCGGRF 165
                  69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.2E-35107168IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.698108168IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.9E-27110165IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.9E-24111133IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860113133IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.9E-24142165IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MTSTHDVTDN EAGEKEQSES QMQSLSANGI SDPGAGMQNN QYVTPAPLGT GYAMAPPPYP  60
YPDPYYRSVF APNDTQPYPP QPYGGHPMAH IQLMGIQQAG VPLPTNAIEE PVFVNAKQYH  120
GILRRRQSRA KAESENKAIR NRKPYLHESR HQHALRRARG CGGRFLNSKK DENQQDELSP  180
ADKSHSNDNH NPDKNNLAPS DRAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-20108173166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.DH2U1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015959290.11e-150nuclear transcription factor Y subunit A-7 isoform X2
SwissprotQ84JP13e-62NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A444ZDS81e-149A0A444ZDS8_ARAHY; Uncharacterized protein
STRINGGLYMA09G02770.21e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53793355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-50nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]