PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.DA43M
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 278aa    MW: 32248.8 Da    PI: 9.706
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.DA43MgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.86.1e-115633698
                 EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 ++l++++g +W++    ++++g+++++kGWkeF+    L+ g ++ F+++g+s+   ++ +f+
  Aradu.DA43M  5 VQLQSPDGTEWRIDW--TNRDGEILFEKGWKEFATFYTLENGHVLWFEYNGTSNI--KINIFD 63
                 789************..*******************************9986555..677765 PP
2B338.81.7e-121982761799
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   lp  f++ + ++++   +  +     ++W  +liy  ++++ +++  W+ F ++n+Lk+gD+++F+l++r++  l v+++r+
  Aradu.DA43M 198 NLPVCFFRMYFENTK---QYAILRVGKKQWHATLIYYPYRKTALIS-SWRLFLEENNLKAGDVCIFELINRQRPDLQVHIRRS 276
                  577777777755533...356666788*********9999887666.**********************9999999****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.308165IPR003340B3 DNA binding domain
CDDcd100174.53E-7263No hitNo description
SuperFamilySSF1019361.49E-12372IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-13374IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-8563IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-18175276IPR015300DNA-binding pseudobarrel domain
CDDcd100178.18E-11176275No hitNo description
SuperFamilySSF1019362.16E-15176276IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.8E-7183277IPR003340B3 DNA binding domain
PfamPF023621.3E-9199276IPR003340B3 DNA binding domain
PROSITE profilePS5086310.109222277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MPNPVQLQSP DGTEWRIDWT NRDGEILFEK GWKEFATFYT LENGHVLWFE YNGTSNIKIN  60
IFDMSALEID YPSNGQIGDD NSVEILDEPP PRRGGGRGRP KKRVIAEPKQ SRASTSKIMK  120
SAIKTKDIDK NPNTQNLKLH VENEKDGQSE ETADLKLPIV QRAIPDMDVI REAKKFKSKN  180
PSFVIKIKQM HQTGSPANLP VCFFRMYFEN TKQYAILRVG KKQWHATLIY YPYRKTALIS  240
SWRLFLEENN LKAGDVCIFE LINRQRPDLQ VHIRRSHD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.DA43M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015946665.20.0B3 domain-containing protein At4g01580-like isoform X1
TrEMBLA0A444XAP11e-178A0A444XAP1_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-21B3 family protein