PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.D77VM | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bZIP | ||||||||
Protein Properties | Length: 260aa MW: 28709.8 Da PI: 10.1005 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 27.5 | 6.7e-09 | 82 | 129 | 5 | 52 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r NR +A rs +R+ ++ eLe+k+++L++e ++L +l+ Aradu.D77VM 82 KRAKRILANRKSAARSKERRACYVVELERKIQVLQTEATTLSAQLNLF 129 9*****************************************999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.5E-12 | 78 | 142 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.933 | 80 | 143 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.3E-8 | 82 | 141 | No hit | No description |
SuperFamily | SSF57959 | 9.85E-10 | 82 | 138 | No hit | No description |
Pfam | PF00170 | 1.3E-7 | 82 | 128 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 8.68E-21 | 83 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MKGQNTESLS KPVSDHQLPP FSPASATVPP IVDISKTTVR PGHRRSNSAD GTSSSSLLLE 60 GIEAKKAMSP DKLAELWTVD PKRAKRILAN RKSAARSKER RACYVVELER KIQVLQTEAT 120 TLSAQLNLFQ RDTTALNEAL KKEVDRLKIA TGEMVTRPNS NSLAMHRPSY SQAPFFSFQS 180 QHFAGELHTM QMPPLHPLSP NMSSPRPLID VTTPYNLSNM LPSDHVPVGQ FQVLDISHPI 240 PHVLIHDGPS ISVNKINDAF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.D77VM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015945073.2 | 1e-179 | transcription factor RF2b | ||||
Swissprot | Q6S4P4 | 1e-49 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A445B5U4 | 1e-164 | A0A445B5U4_ARAHY; Uncharacterized protein | ||||
STRING | XP_004502831.1 | 6e-96 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1548 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 1e-39 | bZIP family protein |
Publications ? help Back to Top | |||
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