PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.D4VWB | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 768aa MW: 83964.3 Da PI: 5.9787 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.4 | 3.9e-21 | 87 | 142 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+ +++p++++r++L+++lgL+ +qVk+WFqNrR+++k Aradu.D4VWB 87 KKKYHRHTPHQTQELEAFFKDCNHPDEKQRADLSRRLGLENKQVKFWFQNRRTQMK 142 79999************************************************999 PP | |||||||
2 | START | 148 | 8.5e-47 | 296 | 510 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 la+ a++el+k+a+a++p+W k+ e++n++e+ + + + + +ea+r++gvv+ ++ lve+++d +W+e+++ +a tl+vi s Aradu.D4VWB 296 LALVAMDELIKMAQADSPLWIKMDggkEILNQEEYARMSSFI-SptspgYVTEASRETGVVIINSSALVETMMDPE-RWSEMFPsmvsRAVTLDVIAS 391 67889*********************9999999987655322.1356789****************9999988888.********************* PP T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE..EEEEE-EE--SSX CS START 88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk..vtwvehvdlkgrl 176 g g lq+m+ae q+lsplvp R f+R+++q+ +g w++vd S+d ++ +lpSg+l+++++ng sk +twveh ++++l Aradu.D4VWB 392 GmggsrnGSLQVMQAEIQLLSPLVPvRQLSFLRFCKQHAEGLWAVVDASIDAGRNFK---------RLPSGFLVQDTPNGFSKasITWVEHSQYDESL 480 ******************************************************975.........7**************65449************ PP XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 177 phwllrslvksglaegaktwvatlqrqcek 206 +h+l+r+l+ sgl +ga +w atlqrqce+ Aradu.D4VWB 481 IHQLYRPLIASGLGFGAPRWIATLQRQCEC 510 ****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-21 | 73 | 144 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.52E-20 | 74 | 144 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.281 | 84 | 144 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.7E-19 | 86 | 148 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.02E-18 | 87 | 144 | No hit | No description |
Pfam | PF00046 | 1.1E-18 | 87 | 142 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 119 | 142 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 38.154 | 286 | 513 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.04E-28 | 289 | 510 | No hit | No description |
CDD | cd08875 | 9.40E-107 | 290 | 509 | No hit | No description |
SMART | SM00234 | 2.3E-32 | 295 | 510 | IPR002913 | START domain |
Pfam | PF01852 | 2.8E-39 | 296 | 510 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.62E-15 | 529 | 752 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 768 aa Download sequence Send to blast |
MPGFSAFELP LSSPLISMSK QNFPTLSFSN REMMEGHSEL GLIGDHFDGG LLGRIKDDGY 60 ESRSGSDNFE GASGDDQEAA NDQPKRKKKY HRHTPHQTQE LEAFFKDCNH PDEKQRADLS 120 RRLGLENKQV KFWFQNRRTQ MKTQIERHEN MILKQENERL RAENSVMREA MANPMCNNCG 180 GAAIPGQISF DEHQIRIENA RLKDELNRIC ALANKFLGRP ISSLASPMSL PASNSGLELG 240 IGRNGFSGGS SGLGMSMGLD FGDFSGGTLP AISGIRSPMG LMGNEIHAER SMLLELALVA 300 MDELIKMAQA DSPLWIKMDG GKEILNQEEY ARMSSFISPT SPGYVTEASR ETGVVIINSS 360 ALVETMMDPE RWSEMFPSMV SRAVTLDVIA SGMGGSRNGS LQVMQAEIQL LSPLVPVRQL 420 SFLRFCKQHA EGLWAVVDAS IDAGRNFKRL PSGFLVQDTP NGFSKASITW VEHSQYDESL 480 IHQLYRPLIA SGLGFGAPRW IATLQRQCEC LAIHMSSSIP SEDATAISPA GRRSMLKLAQ 540 RMANNFFSGI CLSSSQKWDT HHLGNVGDEI KVMTRKNTDV PGEPPSIVLC AATSVWMPVS 600 RQRVFDFLRD ERMRGEWVIL SGIGQMKEML RISKGQVDGN SLSVLRANAN NGGESSNNTL 660 FLQETWNDTS CSALLYSPVE VESLKVVMSG GDSTYVALIP SGFTIHPDGH SGTQDGDDGG 720 SSGCLLTVGL QILLNSLPTA KLTAESVETV NDLITGTIQK IKASLGVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.D4VWB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020999150.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X2 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A445CZE7 | 0.0 | A0A445CZE7_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA10G38280.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1192 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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