PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.D4D3B | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | TCP | ||||||||
Protein Properties | Length: 429aa MW: 47196.3 Da PI: 9.7117 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 155.4 | 3.3e-48 | 118 | 280 | 1 | 134 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssasec.eaes 77 aa+kkdrhski+T++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t++WL++++k+aikel+++ s+ s+s+c e++ Aradu.D4D3B 118 AAAKKDRHSKIYTAQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELARSknhsasdeaeagagagannkSFASSSDCdENDF 215 689**************************************************************887777777777777777666666677763333 PP TCP 78 ssssasnsssg........kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 ++ s +n++ + +++++ ++ +++++sa ++++++kesr+karararert++km+++ Aradu.D4D3B 216 EVLSRNNHHRHqqglvrsdARERKLKNAQQKEASACNVRAKMKESREKARARARERTSNKMCNSI 280 3333333333368899974444444477788888888899999*******************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.8E-43 | 120 | 278 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 36.525 | 121 | 179 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.607 | 258 | 275 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048831 | Biological Process | regulation of shoot system development |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MFPSTTYSYS TGPYPCFPSS SSSYPLFPFL NPENNASSSS ATTATNNNNN NNLLHDPSLC 60 VPYIPIPEAL TNLATVVDNT TNLAASSSMP KQQDLNGGGG GGAHHHFGIS SLLTKKPAAA 120 KKDRHSKIYT AQGLRDRRVR LSIEIARKFF DLQDMLGFDK ASNTLDWLFT KSKKAIKELA 180 RSKNHSASDE AEAGAGAGAN NKSFASSSDC DENDFEVLSR NNHHRHQQGL VRSDARERKL 240 KNAQQKEASA CNVRAKMKES REKARARARE RTSNKMCNSI MGNSSSSSGK VLELKKRCPA 300 PSENPHHLGG AEVSQTRDDF NVIEESIVIK RKLKQPSMMS SSHHHHHHHH QLNLPIPNNN 360 KEASFNNNSD NYHPGNYTNL SPNWDNANGP ASTANNRSNF CAIASMNLST GLQIFGKSWE 420 ECTNPSRLH |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.D4D3B |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015946347.1 | 0.0 | transcription factor DICHOTOMA-like | ||||
TrEMBL | A0A445B255 | 0.0 | A0A445B255_ARAHY; Uncharacterized protein | ||||
STRING | XP_007151756.1 | 1e-119 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 4e-29 | TCP family protein |