PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.D2H33
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 569aa    MW: 63847.6 Da    PI: 6.132
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.D2H33genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.14.7e-25123223198
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+l++sd++++g +++ +k+a+e+       ++++++  +l+ +d +g +W++k+iyr++++r++lt+GW+ Fv a++L +gD++vF   + ++++
  Aradu.D2H33 123 FCKTLSTSDTSTHGGFSVLRKHANEClpqldmtMENPTQ--ELVAKDIHGVEWKFKHIYRGHPKRHLLTTGWSAFVAAKKLVVGDSFVFL--RGENGQ 216
                  99****************************987555544..8************************************************..448999 PP

                  .EEEEE- CS
           B3  92 lvvkvfr 98 
                  l+v+v+r
  Aradu.D2H33 217 LRVGVRR 223
                  9****98 PP
2Auxin_resp87.42.7e-29249328183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+h++ t+++F v+Y+Pr+  s+F+v+++k+ +++++ + +GmRfkm+ e+ed   +r+ Gt+vgv d ++ +W nS+WrsLk
  Aradu.D2H33 249 ASHSVMTSTMFVVYYKPRT--SQFIVSLNKYIDTMNNDFKIGMRFKMRHEGEDPLDKRFCGTIVGVGD-ESQEWLNSQWRSLK 328
                  679999************6..9**********************************************.788*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.84E-38112250IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.5E-39115237IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-21122223No hitNo description
PfamPF023622.6E-22123223IPR003340B3 DNA binding domain
PROSITE profilePS5086312.111123225IPR003340B3 DNA binding domain
SMARTSM010193.6E-23123225IPR003340B3 DNA binding domain
PfamPF065079.8E-28249328IPR010525Auxin response factor
SuperFamilySSF542774.07E-8496568No hitNo description
PfamPF023095.2E-7499560IPR033389AUX/IAA domain
PROSITE profilePS5174521.963502569IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MFVFCFVADG AGDDLFKELW RLCAGPLMDV PCVQDRVFYF PQGHIELLPE PTEQELRQMK  60
NQKSPKYDLP SKILCRVIDV KCLAELETDE VYARITLQPS SDNDPLDPNP SCSEKPKQKF  120
YSFCKTLSTS DTSTHGGFSV LRKHANECLP QLDMTMENPT QELVAKDIHG VEWKFKHIYR  180
GHPKRHLLTT GWSAFVAAKK LVVGDSFVFL RGENGQLRVG VRRLNPPQSP TPSSVVSTQN  240
MRLGVIVTAS HSVMTSTMFV VYYKPRTSQF IVSLNKYIDT MNNDFKIGMR FKMRHEGEDP  300
LDKRFCGTIV GVGDESQEWL NSQWRSLKVQ WDEPATMQRP DRVSCWEIEP LVTSPLNTIQ  360
PMAKGKRSRH AEASSSAASG SKESQVATIW QPPHLNGNGN SSQDPENNKA VVPAGPAGEG  420
PACDHNEDGK KGMDCWLFGV NLTSSYSNVV TPLEKELWCE ASTILHCGPK ESIIVGACET  480
EKVQSLNNHS LSNKQGHVPS MRTRTKVKME GVAVGRAIDL TTINGYDELI VELEKMFDIE  540
GEIISQKKWA VTFTDEENDL MLLDDDLWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1391335117355Auxin response factor 1
4ldw_A1e-1391335117355Auxin response factor 1
4ldw_B1e-1391335117355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.D2H33
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020981743.10.0auxin response factor 18-like isoform X1
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLA0A444YMF70.0A0A444YMF7_ARAHY; Auxin response factor
STRINGGLYMA16G02650.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2363723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.11e-172auxin response factor 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]