PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.CX437
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 442aa    MW: 49528.4 Da    PI: 6.8796
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.CX437genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.61.6e-30107211199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                  f+kv tpsdv+k++rlv+pk++ae++    ++++ ++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l
  Aradu.CX437 107 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNDKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGlGElYRHRL 204
                  89***************************9555568889************************************************76688888888 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  ++ ++r+
  Aradu.CX437 205 YIDWRRR 211
                  8888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-4197212IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-30104212IPR015300DNA-binding pseudobarrel domain
CDDcd100172.21E-26105194No hitNo description
SMARTSM010192.0E-23107212IPR003340B3 DNA binding domain
PfamPF023625.0E-28107211IPR003340B3 DNA binding domain
PROSITE profilePS5086313.831107212IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MEEEVKGYSD SREEEEEEEE DEAAEIIPIP NTRQETNSSG NRLQQQQDTA VAPNFSQRKQ  60
LDLMELSLGS GSSKDDRNWQ QGGGGGGGMV GSCSSSSSEA VEKEHMFDKV VTPSDVGKLN  120
RLVIPKQHAE KYFPLDSSSN DKGLLLNFED RNGKLWRFRY SYWNSSQSYV MTKGWSRFVK  180
EKKLDAGDIV SFHRGLGELY RHRLYIDWRR RPDHPPPDPS ASLISPFFLP NHYSAAITWG  240
AGGRFYSLPS PTPPPRHHHF HHHQHHPLAT NYNTHMYGFH HHPGAAATGT SHHLLSGYND  300
QQLNSGSPGP LYYLRSPPSM SIVDPNLHQE RGTAIAPMII DSVPVAHHHH QQQQHQHGVV  360
PNSSNFDSTN TAGKRLRLFG VNMECASSSS SSPAEDHSHL AMSSSLPSSS RFGDQRGDTT  420
TTTTSVLFDL DPSLQYHHHH RH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-621022123114B3 domain-containing transcription factor NGA1
5os9_B4e-621022123114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.CX437
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015968292.10.0B3 domain-containing protein Os03g0120900
RefseqXP_015968293.10.0B3 domain-containing protein Os03g0120900
RefseqXP_020981801.10.0B3 domain-containing protein Os03g0120900
RefseqXP_020981802.10.0B3 domain-containing protein Os03g0120900
RefseqXP_025603292.10.0B3 domain-containing protein Os03g0120900
RefseqXP_025603293.10.0B3 domain-containing protein Os03g0120900
SwissprotO827995e-75NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A445CPL70.0A0A445CPL7_ARAHY; Uncharacterized protein
STRINGGLYMA07G05381.31e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-65B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]