PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.CV1R5
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 191aa    MW: 20767.6 Da    PI: 10.7105
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.CV1R5genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA27.93.2e-094160120
         GATA  1 CsnCgttkTplWRrgpdgnk 20
                 C+ Cgt+kTplWR gp g+k
  Aradu.CV1R5 41 CADCGTSKTPLWRGGPAGPK 60
                 ******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.3943558IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.9E-73960IPR013088Zinc finger, NHR/GATA-type
PfamPF003209.1E-74160IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
DLGYSFLNMV DSTGKGSDSD DASPNSAAAG KSPTTEQKKT CADCGTSKTP LWRGGPAGPK  60
VTPPPTPTAS PFAIYQISSR KLLILRFLHL NVMFFQSLCN ACGIRSRKKK RAILGIARGT  120
TTTDDVKKGK RSNTVANSNN NKFGDSFSFK KRWITMARQR SNPAHTHRNK LGEEEQAAFL  180
LMSLSYGSVY A
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.CV1R5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015937392.18e-98GATA transcription factor 16
RefseqXP_025610681.18e-98GATA transcription factor 16
TrEMBLA0A445AWJ91e-103A0A445AWJ9_ARAHY; Uncharacterized protein
STRINGGLYMA07G37190.19e-44(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-24GATA transcription factor 16