PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.C5CLY

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 1143aa MW: 128122 Da PI: 9.4303

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.C5CLY	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.2	4.4e-09	46	82	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W ++E e++++a +++G++ Wk++a+ + +R+ +++ Aradu.C5CLY 46 QWNKDELERFYEAYRKYGKD-WKKVAAAVR-NRSVEMVE 82 6***************99.*****.*98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.11E-10	42	90	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.993	42	95	IPR017884	SANT domain
SMART	SM00717	4.7E-5	43	91	IPR001005	SANT/Myb domain
Pfam	PF00249	8.7E-8	46	86	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-4	46	83	IPR009057	Homeodomain-like
CDD	cd00167	6.87E-6	47	81	No hit	No description
Pfam	PF06584	4.5E-33	634	734	IPR033471	DIRP domain
SMART	SM01135	9.7E-57	634	735	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1143 aa Download sequence Send to blast
MAPTRKPRSM NKRFSSLNEV SPEKEGMNSN KNKQKKKKLS DKLGSQWNKD ELERFYEAYR 60 KYGKDWKKVA AAVRNRSVEM VEALYNMNRA YLSLPEGTAS VVGLIAMMTD HYNVLEESDS 120 EKESIDSPGS RKPVKRKRGK IELGASKDSV HTQSIASNDG CLSLLKRRRF DGSQPRAVGK 180 RTPRVPVYYS YKKDERENYV SPNKRMLKSV FDANDDEVAH VAALALTEAA KRGGSPQVSQ 240 TPHRRSQQKV SPVQSWERMQ QSGTVPAKFY DTYLDEEFME GSIESRGAEN GEQARDTSSL 300 KDMEGSGTVE VNQKRKKVYR KKERKENVGN HLLDDGGEAC SGTEEGLNFS LKEKIDVEVT 360 NAKPQKRSKK LFFGADESSA VDALHALADL SLMIPASTME SESSVQLKEE RTTVDKDEKP 420 AVPEVTSTSQ NRDKSKLSLK QKVVPSVRGV ELSSSRKSKV VRTTINDKES KALFESKELL 480 PTDDKTWKRK RKPMVLKLAN AKHDSDPNDP LNDEAVDEED KPLIKGKHTG QTSTPAKQKS 540 VRSSESSLCA DQKDLIVSTA EVQLVSLPTK RISKRKMSLQ RTFIPKEKSS ENKLKGQPNK 600 YSSQPQDKAS ILKEKLSSCL SSSMIRRWCA FEWFYSAIDY PWFSKREFME YLNHVGLGNI 660 PRLTRVEWSV IKSSLGKPRR FSEHFLREER QKLEQYRQSV RKHYTELRTG IRDGLPTDLA 720 KPLYVGQRVI ALHPKTREIH DGSVLTVDHD KCRVQFDLPE LGVEFVMDID CMPLNPLDNM 780 PEALRRQVGA CKFPCISKEP QMDGISSFGG CLTCTSSNPV ERAPNLAKQE KQAVGAQPCN 840 MTDHQTKEAN IHALSELTRF LDKKEILLME LKNSNNAILE NQIDSGSFKD SEALGKHYAT 900 VSNALLHLRQ RNTYTGNSLP LKPQANLNVH DGLPGMLDGS LAQELGSTVI EIIKGSRVKA 960 HAMVDAAFRA LASVKEGEDA FLKIGQVLDS INYQQLAPNT SLPAMKSQEQ GNGSLDNHTR 1020 SIFSSSEPLL GDVSGQKLRN DSDKVDAQIP SELITSCVAI LIMIQLTFIT MYLRILTTFL 1080 ETVSSTQTCT ERQYPPSDVA QILDSAVTSL HPCCPQNLPI YREIQMCMGR IKTQILALIP 1140 TST

Sequence ? help Back to Top

Protein Sequence Length: 1143 aa Download sequence Send to blast

MAPTRKPRSM NKRFSSLNEV SPEKEGMNSN KNKQKKKKLS DKLGSQWNKD ELERFYEAYR  60
KYGKDWKKVA AAVRNRSVEM VEALYNMNRA YLSLPEGTAS VVGLIAMMTD HYNVLEESDS  120
EKESIDSPGS RKPVKRKRGK IELGASKDSV HTQSIASNDG CLSLLKRRRF DGSQPRAVGK  180
RTPRVPVYYS YKKDERENYV SPNKRMLKSV FDANDDEVAH VAALALTEAA KRGGSPQVSQ  240
TPHRRSQQKV SPVQSWERMQ QSGTVPAKFY DTYLDEEFME GSIESRGAEN GEQARDTSSL  300
KDMEGSGTVE VNQKRKKVYR KKERKENVGN HLLDDGGEAC SGTEEGLNFS LKEKIDVEVT  360
NAKPQKRSKK LFFGADESSA VDALHALADL SLMIPASTME SESSVQLKEE RTTVDKDEKP  420
AVPEVTSTSQ NRDKSKLSLK QKVVPSVRGV ELSSSRKSKV VRTTINDKES KALFESKELL  480
PTDDKTWKRK RKPMVLKLAN AKHDSDPNDP LNDEAVDEED KPLIKGKHTG QTSTPAKQKS  540
VRSSESSLCA DQKDLIVSTA EVQLVSLPTK RISKRKMSLQ RTFIPKEKSS ENKLKGQPNK  600
YSSQPQDKAS ILKEKLSSCL SSSMIRRWCA FEWFYSAIDY PWFSKREFME YLNHVGLGNI  660
PRLTRVEWSV IKSSLGKPRR FSEHFLREER QKLEQYRQSV RKHYTELRTG IRDGLPTDLA  720
KPLYVGQRVI ALHPKTREIH DGSVLTVDHD KCRVQFDLPE LGVEFVMDID CMPLNPLDNM  780
PEALRRQVGA CKFPCISKEP QMDGISSFGG CLTCTSSNPV ERAPNLAKQE KQAVGAQPCN  840
MTDHQTKEAN IHALSELTRF LDKKEILLME LKNSNNAILE NQIDSGSFKD SEALGKHYAT  900
VSNALLHLRQ RNTYTGNSLP LKPQANLNVH DGLPGMLDGS LAQELGSTVI EIIKGSRVKA  960
HAMVDAAFRA LASVKEGEDA FLKIGQVLDS INYQQLAPNT SLPAMKSQEQ GNGSLDNHTR  1020
SIFSSSEPLL GDVSGQKLRN DSDKVDAQIP SELITSCVAI LIMIQLTFIT MYLRILTTFL  1080
ETVSSTQTCT ERQYPPSDVA QILDSAVTSL HPCCPQNLPI YREIQMCMGR IKTQILALIP  1140
TST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	569	576	KRISKRKM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.C5CLY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235362	7e-84	AC235362.1 Glycine max strain Williams 82 clone GM_WBb0099N18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015968595.1	0.0	protein ALWAYS EARLY 3 isoform X4
Refseq	XP_025603667.1	0.0	protein ALWAYS EARLY 3 isoform X4
TrEMBL	A0A445CNH1	0.0	A0A445CNH1_ARAHY; Uncharacterized protein
STRING	GLYMA20G37826.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding